BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0101.p
         (229 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310888|ref|YP_003774980.1| metal ion ABC transporter perme...   437   e-124
gi|300310326|ref|YP_003774418.1| metal ion ABC transporter perme...   169   1e-43
gi|300311639|ref|YP_003775731.1| metal ion ABC transporter perme...   157   5e-40

>gi|300310888|ref|YP_003774980.1| metal ion ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 229

 Score =  437 bits (1125), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 229/229 (100%), Positives = 229/229 (100%)

Query: 1   MSALSSLFSQIDLSVIDWGEVGDATLETLAMTGGSLFFTVLLGLPLGILLFLTNRRQLLE 60
           MSALSSLFSQIDLSVIDWGEVGDATLETLAMTGGSLFFTVLLGLPLGILLFLTNRRQLLE
Sbjct: 1   MSALSSLFSQIDLSVIDWGEVGDATLETLAMTGGSLFFTVLLGLPLGILLFLTNRRQLLE 60

Query: 61  QRGLYLVLSLVVNVLRSVPFLILLIMLIPFTLWLVGTSLGVTGAIPPLVIGTAPFFARLT 120
           QRGLYLVLSLVVNVLRSVPFLILLIMLIPFTLWLVGTSLGVTGAIPPLVIGTAPFFARLT
Sbjct: 61  QRGLYLVLSLVVNVLRSVPFLILLIMLIPFTLWLVGTSLGVTGAIPPLVIGTAPFFARLT 120

Query: 121 ESVLREIDRGILEACTAMGARRRQIIFGALLPEALPGLLAAVTITAITLMSYAAMSGVIG 180
           ESVLREIDRGILEACTAMGARRRQIIFGALLPEALPGLLAAVTITAITLMSYAAMSGVIG
Sbjct: 121 ESVLREIDRGILEACTAMGARRRQIIFGALLPEALPGLLAAVTITAITLMSYAAMSGVIG 180

Query: 181 GGGLGDLAIRYGYQRFQTEVMVVTVAILVVLVQLLQFFGDRLVLRFTRK 229
           GGGLGDLAIRYGYQRFQTEVMVVTVAILVVLVQLLQFFGDRLVLRFTRK
Sbjct: 181 GGGLGDLAIRYGYQRFQTEVMVVTVAILVVLVQLLQFFGDRLVLRFTRK 229


>gi|300310326|ref|YP_003774418.1| metal ion ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 217

 Score =  169 bits (429), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 111/221 (50%), Positives = 147/221 (66%), Gaps = 11/221 (4%)

Query: 11  IDLSVIDWGEVGDATLETLAMTG--GSLFFTVLLGLPLGILLFLTNRRQLLEQRGLYLVL 68
           IDL V  +GE    TL  + ++G  GSL     LG+PLGI L +T  + +L       + 
Sbjct: 6   IDLFVSSFGE----TLMMVVISGVVGSL-----LGIPLGIALHITEAKGVLPNVAFNRIA 56

Query: 69  SLVVNVLRSVPFLILLIMLIPFTLWLVGTSLGVTGAIPPLVIGTAPFFARLTESVLREID 128
            L+VN +RS PF+ILL+ +IP T + VGTS+G   AI PL I  APF ARL E+ LRE+D
Sbjct: 57  GLLVNAVRSTPFIILLVAVIPMTRFFVGTSIGTAAAIVPLTIAAAPFIARLVETALREVD 116

Query: 129 RGILEACTAMGARRRQIIFGALLPEALPGLLAAVTITAITLMSYAAMSGVIGGGGLGDLA 188
            G++EA  AMGA   QII+  L+PEA  G++A +TIT ++L+ Y+AM+G IGGGGLGDL 
Sbjct: 117 HGLVEAAQAMGATTWQIIYKVLVPEAFAGIVAGLTITFVSLVGYSAMAGAIGGGGLGDLG 176

Query: 189 IRYGYQRFQTEVMVVTVAILVVLVQLLQFFGDRLVLRFTRK 229
           IRYGYQRF  EVM+  V IL+V VQL+Q  GD LV + + +
Sbjct: 177 IRYGYQRFLPEVMLAVVLILIVFVQLVQSLGDLLVRKLSHR 217


>gi|300311639|ref|YP_003775731.1| metal ion ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 199

 Score =  157 bits (398), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 92/187 (49%), Positives = 128/187 (68%)

Query: 43  GLPLGILLFLTNRRQLLEQRGLYLVLSLVVNVLRSVPFLILLIMLIPFTLWLVGTSLGVT 102
           G+PL +LL ++     L+   L+ VL  V+N  R+ PF++LL+ LIP T  + GT++GV 
Sbjct: 13  GVPLAVLLIVSAPGGFLDWPRLHRVLGSVINGFRATPFIVLLVALIPLTRLVAGTTIGVW 72

Query: 103 GAIPPLVIGTAPFFARLTESVLREIDRGILEACTAMGARRRQIIFGALLPEALPGLLAAV 162
            AI PL I   PFFAR+ E  LRE+D G++EA  A+G R+  I++   LPEALPG++   
Sbjct: 73  AAIVPLAISATPFFARIVEVSLREVDPGLVEAAQALGCRKWDIVWHVYLPEALPGIVGGF 132

Query: 163 TITAITLMSYAAMSGVIGGGGLGDLAIRYGYQRFQTEVMVVTVAILVVLVQLLQFFGDRL 222
           TIT + L+S +AM+G +G GGLGDLAIRYGYQRF T+VMV+ +A+L+VLV L+Q  GD  
Sbjct: 133 TITLVALISSSAMAGAVGAGGLGDLAIRYGYQRFDTQVMVIVIAMLIVLVSLVQRTGDSY 192

Query: 223 VLRFTRK 229
           V R   +
Sbjct: 193 VRRLRNR 199


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.146    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 421,610
Number of extensions: 10779
Number of successful extensions: 95
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 4
Length of query: 229
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 147
Effective length of database: 1,231,600
Effective search space: 181045200
Effective search space used: 181045200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 129 (54.3 bits)