BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0094.p (133 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310884|ref|YP_003774976.1| chemotaxis regulator protein [H... 272 6e-75 gi|300311293|ref|YP_003775385.1| chemotaxis regulator protein [H... 241 1e-65 gi|300311026|ref|YP_003775118.1| chemotaxis response regulator r... 206 5e-55 gi|300311339|ref|YP_003775431.1| CheY chemotaxis protein [Herbas... 166 5e-43 gi|300312287|ref|YP_003776379.1| chemotaxis cheY protein [Herbas... 81 2e-17 >gi|300310884|ref|YP_003774976.1| chemotaxis regulator protein [Herbaspirillum seropedicae SmR1] Length = 133 Score = 272 bits (696), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 133/133 (100%), Positives = 133/133 (100%) Query: 1 MAATEQHFLVVDDFSTMRRIVSGLLKELEYTKIVEADDGSSALKILESGASNITFVLTDW 60 MAATEQHFLVVDDFSTMRRIVSGLLKELEYTKIVEADDGSSALKILESGASNITFVLTDW Sbjct: 1 MAATEQHFLVVDDFSTMRRIVSGLLKELEYTKIVEADDGSSALKILESGASNITFVLTDW 60 Query: 61 NMPVMDGLTLLKKIRSTPALSHLPVLMITAEAKKENIVMAAQEGADGYIVKPFNATTLKE 120 NMPVMDGLTLLKKIRSTPALSHLPVLMITAEAKKENIVMAAQEGADGYIVKPFNATTLKE Sbjct: 61 NMPVMDGLTLLKKIRSTPALSHLPVLMITAEAKKENIVMAAQEGADGYIVKPFNATTLKE 120 Query: 121 KIEKILARRAHMQ 133 KIEKILARRAHMQ Sbjct: 121 KIEKILARRAHMQ 133 >gi|300311293|ref|YP_003775385.1| chemotaxis regulator protein [Herbaspirillum seropedicae SmR1] Length = 135 Score = 241 bits (616), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 116/132 (87%), Positives = 126/132 (95%) Query: 1 MAATEQHFLVVDDFSTMRRIVSGLLKELEYTKIVEADDGSSALKILESGASNITFVLTDW 60 MAA +Q+FLVVDDFSTMRRIVSGLLKELEYTKIVEADDGSSALKILE+GA +TFVLTDW Sbjct: 1 MAADDQYFLVVDDFSTMRRIVSGLLKELEYTKIVEADDGSSALKILEAGALPVTFVLTDW 60 Query: 61 NMPVMDGLTLLKKIRSTPALSHLPVLMITAEAKKENIVMAAQEGADGYIVKPFNATTLKE 120 NMPVMDGLTLLKKIR+TP+++HLPVLMITAEAKKENIV AAQ GADGYIVKPFNA TLK+ Sbjct: 61 NMPVMDGLTLLKKIRATPSMAHLPVLMITAEAKKENIVEAAQSGADGYIVKPFNAATLKD 120 Query: 121 KIEKILARRAHM 132 KIEKILARRAH+ Sbjct: 121 KIEKILARRAHL 132 >gi|300311026|ref|YP_003775118.1| chemotaxis response regulator receiver domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 134 Score = 206 bits (524), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 98/130 (75%), Positives = 112/130 (86%) Query: 3 ATEQHFLVVDDFSTMRRIVSGLLKELEYTKIVEADDGSSALKILESGASNITFVLTDWNM 62 +T+QHFLVVDDFSTMRRI+ GLLKELEY K+ +ADDG+SA KILESGA I+FV+TDWNM Sbjct: 2 STDQHFLVVDDFSTMRRIIIGLLKELEYLKVTDADDGTSAWKILESGALPISFVITDWNM 61 Query: 63 PVMDGLTLLKKIRSTPALSHLPVLMITAEAKKENIVMAAQEGADGYIVKPFNATTLKEKI 122 P MDGL LLKKIR TP L LPVLM++AEAKKENIV+AA+ GADGYIVKPFNA TL +KI Sbjct: 62 PGMDGLGLLKKIRETPRLKRLPVLMVSAEAKKENIVLAAETGADGYIVKPFNAATLDDKI 121 Query: 123 EKILARRAHM 132 KIL RR+ M Sbjct: 122 SKILQRRSSM 131 >gi|300311339|ref|YP_003775431.1| CheY chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 131 Score = 166 bits (420), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 83/130 (63%), Positives = 97/130 (74%), Gaps = 2/130 (1%) Query: 1 MAATEQHFLVVDDFSTMRRIVSGLLKELEYTKIVEADDGSSALKILESGASNITFVLTDW 60 M+ FLVVDDFSTMRRIV LLKEL YT + EA+DG AL+ L S FV++DW Sbjct: 1 MSGPNTKFLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGVQALQKLRS--DQFDFVVSDW 58 Query: 61 NMPVMDGLTLLKKIRSTPALSHLPVLMITAEAKKENIVMAAQEGADGYIVKPFNATTLKE 120 NMP MDGLT+L++IR PALS LPVLM+TAEAKKENIV AAQ GA+GY+VKPF A TL E Sbjct: 59 NMPNMDGLTMLQEIRKDPALSKLPVLMVTAEAKKENIVAAAQAGANGYVVKPFTAATLDE 118 Query: 121 KIEKILARRA 130 K+ KI + A Sbjct: 119 KLGKIFEKMA 128 >gi|300312287|ref|YP_003776379.1| chemotaxis cheY protein [Herbaspirillum seropedicae SmR1] Length = 121 Score = 81.3 bits (199), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 45/122 (36%), Positives = 70/122 (57%), Gaps = 3/122 (2%) Query: 6 QHFLVVDDFSTMRRIVSGLLKELEYTKIVEADDGSSALKILESGASNITFVLTDWNMPVM 65 + L VDD ++R++V LK Y + EA DG AL+ ++ + VLTD NMP M Sbjct: 3 KTILAVDDSGSLRQMVVFSLKAAGYN-VTEAVDGVDALE--KAKSQTFDLVLTDQNMPRM 59 Query: 66 DGLTLLKKIRSTPALSHLPVLMITAEAKKENIVMAAQEGADGYIVKPFNATTLKEKIEKI 125 DGLTL++ +R + + +P+LM+T E E GA+G++VKPF+ L E + K+ Sbjct: 60 DGLTLIRSLRELTSYARVPILMLTTEFSDEMKAKGKAAGANGWLVKPFDPQRLTEVVRKV 119 Query: 126 LA 127 + Sbjct: 120 IG 121 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.131 0.356 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 358,897 Number of extensions: 12178 Number of successful extensions: 151 Number of sequences better than 1.0e-08: 31 Number of HSP's gapped: 159 Number of HSP's successfully gapped: 31 Length of query: 133 Length of database: 1,619,870 Length adjustment: 75 Effective length of query: 58 Effective length of database: 1,264,745 Effective search space: 73355210 Effective search space used: 73355210 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 125 (52.8 bits)