BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0086.p
         (212 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310875|ref|YP_003774967.1| acetyl-coenzyme A synthetase [H...   434   e-123
gi|300312417|ref|YP_003776509.1| propionyl-CoA ligase [Herbaspir...   155   2e-39
gi|300309365|ref|YP_003773457.1| acetyl-coenzyme A synthetase [H...    65   3e-12

>gi|300310875|ref|YP_003774967.1| acetyl-coenzyme A synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 660

 Score =  434 bits (1115), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 208/210 (99%), Positives = 210/210 (100%)

Query: 1   VADIETFKQENRVFAPPAELVKHAAISGMDAYHALNAEFAKDYEGTWARLAKDNLKWHKP 60
           +ADIETFKQENRVFAPPAELVKHAAISGMDAYHALNAEFAKDYEGTWARLAKDNLKWHKP
Sbjct: 1   MADIETFKQENRVFAPPAELVKHAAISGMDAYHALNAEFAKDYEGTWARLAKDNLKWHKP 60

Query: 61  FTQTLDESNAPFYKWFADGKVNVSYNCLDVNLENGNADKTAVIFESDDGKVTRVSYRELH 120
           FTQTLDESNAPFYKWFADG+VNVSYNCLDVNLENGNADKTAVIFESDDGKVTRVSYRELH
Sbjct: 61  FTQTLDESNAPFYKWFADGQVNVSYNCLDVNLENGNADKTAVIFESDDGKVTRVSYRELH 120

Query: 121 QKVCQFANGLKSLGIKKGDRVVIYMPMSVEGVAAMQACARIGATHSVVFGGFSAKSLHER 180
           QKVCQFANGLKSLGIKKGDRVVIYMPMSVEGVAAMQACARIGATHSVVFGGFSAKSLHER
Sbjct: 121 QKVCQFANGLKSLGIKKGDRVVIYMPMSVEGVAAMQACARIGATHSVVFGGFSAKSLHER 180

Query: 181 VIDAGAVAVLTADYQVRGGKQLPLKSIVDE 210
           VIDAGAVAVLTADYQVRGGKQLPLKSIVDE
Sbjct: 181 VIDAGAVAVLTADYQVRGGKQLPLKSIVDE 210


>gi|300312417|ref|YP_003776509.1| propionyl-CoA ligase
           [Herbaspirillum seropedicae SmR1]
          Length = 628

 Score =  155 bits (393), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 79/180 (43%), Positives = 114/180 (63%), Gaps = 3/180 (1%)

Query: 32  YHALNAEFAKDYEGTWARLAKDNLKWHKPFTQTLDESNAPFYKWFADGKVNVSYNCLDVN 91
           Y     +  +  E  WA+ A+  + W +PF++TLD S  PF +WF DG+ N+ +N +D +
Sbjct: 3   YEQFYRQSVEQPEAFWAQEAQ-RIHWQQPFSRTLDYSRPPFARWFIDGQTNLCHNAVDRH 61

Query: 92  LENGNADKTAVIFESDDGKVTRV-SYRELHQKVCQFANGLKSLGIKKGDRVVIYMPMSVE 150
           L    A + A+I  S +    RV +Y EL Q+V   A  +++LG+++GDRV+IYMPM  E
Sbjct: 62  LPE-RAQQAALIAISTETNSERVYTYAELQQEVMAMAASMQALGVQRGDRVLIYMPMIAE 120

Query: 151 GVAAMQACARIGATHSVVFGGFSAKSLHERVIDAGAVAVLTADYQVRGGKQLPLKSIVDE 210
            V AM ACARIGA HSVVFGGF++ SL  R+ DA    +++AD   RGGK +P K ++DE
Sbjct: 121 AVFAMLACARIGAVHSVVFGGFASNSLASRIDDAQPRLIVSADAGSRGGKVIPYKGLLDE 180


>gi|300309365|ref|YP_003773457.1| acetyl-coenzyme A synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 549

 Score = 65.5 bits (158), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 66/123 (53%), Gaps = 2/123 (1%)

Query: 69  NAPFYKWFADGKVNVSYNCLDVNLENGNADKTAVIFESDDGKVTRVSYRELHQKVCQFAN 128
           N   Y+W      N++    D    +G+  +TA+I E  DG VT  SY +L     +FAN
Sbjct: 20  NPSPYEWQIPTHFNIAQAACD-RWADGSG-RTAIICEDADGSVTSYSYDQLKILSDRFAN 77

Query: 129 GLKSLGIKKGDRVVIYMPMSVEGVAAMQACARIGATHSVVFGGFSAKSLHERVIDAGAVA 188
            L++ G+ +GDR+ IY+   +E V    A  ++GA    +F  F   ++  R+ ++GAVA
Sbjct: 78  ALRAAGVGRGDRIGIYLSQRIETVITHLAAYKLGAITVPLFYLFGPDAIAYRLDNSGAVA 137

Query: 189 VLT 191
           ++T
Sbjct: 138 LVT 140


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 658,678
Number of extensions: 26021
Number of successful extensions: 83
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 3
Length of query: 212
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 131
Effective length of database: 1,236,335
Effective search space: 161959885
Effective search space used: 161959885
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)