BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0078.p (588 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310867|ref|YP_003774959.1| outer membrane lipoprotein [Her... 1192 0.0 gi|300311501|ref|YP_003775593.1| outer membrane /protective OMA8... 65 2e-11 >gi|300310867|ref|YP_003774959.1| outer membrane lipoprotein [Herbaspirillum seropedicae SmR1] Length = 588 Score = 1192 bits (3083), Expect = 0.0, Method: Compositional matrix adjust. Identities = 582/588 (98%), Positives = 584/588 (99%) Query: 1 MKWTRSLAITLLWCAAEPAIAAYQVDIEAPKPVQSLLKDFLDLSRYQDRDDISDEQLKFM 60 MKWTRSLAITLLWCAAEPAIAAYQVDIEAPKPVQSLLKDFLDLSRYQDRDDISDEQLKFM Sbjct: 1 MKWTRSLAITLLWCAAEPAIAAYQVDIEAPKPVQSLLKDFLDLSRYQDRDDISDEQLKFM 60 Query: 61 MDTAGEQVRDLTATEGYFTPVTKVSEESAASKDGVRRITVTVDPGPRTLVESAEISVTGS 120 MDTAGEQVRDLTATEGYFTPVTKVSEESAA KDGVRRITVTVDPGPRTLVESAEISVTGS Sbjct: 61 MDTAGEQVRDLTATEGYFTPVTKVSEESAAGKDGVRRITVTVDPGPRTLVESAEISVTGS 120 Query: 121 AASQDAARVAQLRTDWSLSRGEPFRQQDWDKAKNAGLATLQQKKYAAARIADSEARIDPQ 180 AASQDAARVAQLRTDWSLS GEPFRQQDWDKAKNAGLATLQQKKYAAARIADSEARI PQ Sbjct: 121 AASQDAARVAQLRTDWSLSPGEPFRQQDWDKAKNAGLATLQQKKYAAARIADSEARIAPQ 180 Query: 181 VQQADLSVRYDSGPAFTLGALQITGTRRYPESIIRNVSPLIVGEPYDVDRLLALQRQIQN 240 QQADLSVRYDSGPAFTLGALQITGTRRYPESIIRNVSPLIVGEPYDVDRLLALQRQIQN Sbjct: 181 AQQADLSVRYDSGPAFTLGALQITGTRRYPESIIRNVSPLIVGEPYDVDRLLALQRQIQN 240 Query: 241 TPYFSNAIVAIDDDPAHPDQTPVKVQVTEFPTQRIRTGVGYGTDTGAQAEGRYSHYNVFN 300 TPYFSNAIVAIDDDPAHPDQTPVKVQVTEFPTQRIRTGVGYGTDTGAQAEGRYSHYNVFN Sbjct: 241 TPYFSNAIVAIDDDPAHPDQTPVKVQVTEFPTQRIRTGVGYGTDTGAQAEGRYSHYNVFN 300 Query: 301 RAYVFDSQLRLEQKRQYGLLSLAMPPDSKAFVNSINTAYDRTTLEGIDLRTQQVGLKRAR 360 RAYVFDSQLRLEQKRQYGLLSLAMPPDSKAFVNSINTAYDRTTLEGIDLRTQQVGLKRAR Sbjct: 301 RAYVFDSQLRLEQKRQYGLLSLAMPPDSKAFVNSINTAYDRTTLEGIDLRTQQVGLKRAR 360 Query: 361 NSDNYDTTYSLTYYRDELVQENGVTLPANTIVTPGKHRALVPGFAWSRRNVDNPIFPRHG 420 NSDNYDTTYSLTYYRDELVQENGVTLPANTIVTPGKHRALVPGFAWSRRNVDNPIFPRHG Sbjct: 361 NSDNYDTTYSLTYYRDELVQENGVTLPANTIVTPGKHRALVPGFAWSRRNVDNPIFPRHG 420 Query: 421 NLLTLEAGVALKGVLTDQSFSRLYGRFKQFVPVGKRDIVVLRAELGGVFTAGRAGSVPAS 480 NLLTLEAG+ALKGVLTDQSFSRLYGRFKQFVPVGKRDIVVLRAELGGVFTAGRAGSVPAS Sbjct: 421 NLLTLEAGLALKGVLTDQSFSRLYGRFKQFVPVGKRDIVVLRAELGGVFTAGRAGSVPAS 480 Query: 481 LLFRTGGNDSVRGYSYQSIGNEQNGTVYPTKYLAVGSTEYQRWFSENWGAAVFYDMGAAA 540 LLFRTGGNDSVRGYSYQSIGNEQNGTVYPTKYLAVGSTEYQRWFSENWGAAVFYDMGAAA Sbjct: 481 LLFRTGGNDSVRGYSYQSIGNEQNGTVYPTKYLAVGSTEYQRWFSENWGAAVFYDMGAAA 540 Query: 541 DNWSNKTFYHGVGTGARWRSPVGTLNLDLAYGIQKRQVRPHISLGIAF 588 DNWSNKTFYHGVGTGARWRSPVGTLNLDLAYGIQKRQ+RPHISLGIAF Sbjct: 541 DNWSNKTFYHGVGTGARWRSPVGTLNLDLAYGIQKRQIRPHISLGIAF 588 >gi|300311501|ref|YP_003775593.1| outer membrane /protective OMA87 antigen protein [Herbaspirillum seropedicae SmR1] Length = 791 Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 120/571 (21%), Positives = 198/571 (34%), Gaps = 67/571 (11%) Query: 46 YQDRDDISDEQLKFMMDTAGEQVRDLTATEGYFTPVTKVSEESAASKDGVRRITVTVDPG 105 Y D S E+L+ ++T +R GY + ++ S ITV + G Sbjct: 220 YTKADQYSKEKLQGDIET----LRSYYLDRGYLEMQVESTQVSITPDKKDIYITVNIKEG 275 Query: 106 PRTLVESAEISVTGSAASQDAARVAQLRTDWSLSRGEPFRQQDWDKAKNAGLATLQQKKY 165 + V ++ + A++ QL+ S + D K G L Y Sbjct: 276 EKYTVSGVKLEGEMFGMEPELAKLVQLKAGDVYSGAKL-----TDSTKKIG-ERLGNFGY 329 Query: 166 AAARIADSEARIDPQVQQADLSVRYDSGPAFTLGALQITGTRRYPESIIRNVSPLIVGEP 225 A A + ++ +D + ++ ++ D G + + I G + + +IR Sbjct: 330 AFANV-NANPNVDREKKEVAFTIMIDPGKRVYVRHINIAGNTKTRDEVIRREFRQFEDSW 388 Query: 226 YDVDRLLALQRQIQNTPYFSNAIVAIDDDPAHPDQTPVKVQVTEFPTQRIRTGVGYGTDT 285 YD +++ + ++ YF + + P DQ V ++V E PT I G G+ Sbjct: 389 YDGEKIKLSRDRVDRLGYFKEVTLDTPEVPGTSDQVDVNMKVEEKPTGNIMVGAGFSQSD 448 Query: 286 GAQAEGRYSHYNVFNRAYVFDSQLRLEQKRQYGLLSLAMPPDSKAFVNSINTAYDRTTLE 345 G S N F + + + +S P + ++ Y RT Sbjct: 449 KLSLTGSISQENAFGSGNTVGIDINTSSRYRTVSVSTTNPYFTDDGISRTYEVYLRTVRP 508 Query: 346 GI----DLRTQQVG-----------LKRA------RNSDNYDTTYSLTYYRDELVQENGV 384 + D R + +G L R N+D T S T YR + G Sbjct: 509 SVYATGDYRVKTLGGSIKFGVPFSELDRVFFGVGLENTDVSTDTTSPTLYRQYVRDFGGA 568 Query: 385 TLPANTIVTPGKHRAL-------VP-GFAWSRRNVDNPIFPRHGNLLTLEAGVALKGVLT 436 + + + G + +P AW R D+ + P G V+ G L Sbjct: 569 GVAGCDVTSSGNGCGIGSARTTSIPLTVAWQRDGRDSALVPTTGRYQRANLEVSYLGTL- 627 Query: 437 DQSFSRLYGRFKQFVPVGKRDIVVLRAELGGVFTAGRA-GSVPASLL--FRTGGNDSVRG 493 + R + + F P + + + L G GR GS P + + GG +VRG Sbjct: 628 --KYYRASYQHQYFQPFFSKAVTL---ALNGEVDYGRGIGSKPYPVFKNYYAGGIGTVRG 682 Query: 494 YSYQSIGN--EQNGTVYPTKYLAVGSTEYQ------------RWFSENWGAAVFYDMGAA 539 Y S+G+ +Q G G+ E Q RWF+ G VF D Sbjct: 683 YEASSLGSLKDQYGDSMGGASRLYGNVELQFPFPGSGQDRTLRWFTFFDGGNVFAD---- 738 Query: 540 ADNWSNKTFYHGVGTGARWRSPVGTLNLDLA 570 N + G G W SP+G L L Sbjct: 739 GQNIKFNDLRYSAGVGISWVSPIGPLKLSFG 769 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.133 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,903,603 Number of extensions: 82643 Number of successful extensions: 220 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 218 Number of HSP's successfully gapped: 2 Length of query: 588 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 498 Effective length of database: 1,193,720 Effective search space: 594472560 Effective search space used: 594472560 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)