BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0077.p (1300 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310866|ref|YP_003774958.1| signal peptide protein [Herbasp... 2572 0.0 >gi|300310866|ref|YP_003774958.1| signal peptide protein [Herbaspirillum seropedicae SmR1] Length = 1300 Score = 2572 bits (6667), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1295/1300 (99%), Positives = 1298/1300 (99%) Query: 1 MVLALAGAALYATQTESGARLLWNTAVKTLGGKLSGQLLGGTVADGLHLRAVHYQDGQRI 60 MVLALAGAALYATQTESGARLLWNTAVKTLGGKLSGQLLGGTVADGLHLRAVHYQDGQRI Sbjct: 1 MVLALAGAALYATQTESGARLLWNTAVKTLGGKLSGQLLGGTVADGLHLRAVHYQDGQRI 60 Query: 61 LDIDRLDASWRLSLLKRRFSLAYLRAGTVQLNQQPSPSEPSSLPASLSLPLALEIGEISL 120 LDIDRLDASWRLSLLKRRFSLAYLRAGTVQLNQQPSPSEPSSLPASLSLPLALEIGEISL Sbjct: 61 LDIDRLDASWRLSLLKRRFSLAYLRAGTVQLNQQPSPSEPSSLPASLSLPLALEIGEISL 120 Query: 121 DKFSLTQGTSTTELSKLRLHGSSDGVQHTLVLDSLVTPYGQATALVHLNGKAPFDIGGGL 180 DKFSLTQGTSTTELSKLRLHGSSDGVQHTLVLDSLVTPYGQATALVHLNGKAPFDIGGGL Sbjct: 121 DKFSLTQGTSTTELSKLRLHGSSDGVQHTLVLDSLVTPYGQATALVHLNGKAPFDIGGGL 180 Query: 181 ELGGVYQHGEFKEQYQLAAQLSGSLQELGVALKASGDKLKGDADIIATPFAAVPLKRARV 240 ELGGVYQHGEFKEQYQLAAQLSGSLQELGVALKASGDKLKGDADIIATPFAAVPLKRARV Sbjct: 181 ELGGVYQHGEFKEQYQLAAQLSGSLQELGVALKASGDKLKGDADIIATPFAAVPLKRARV 240 Query: 241 DLQHLNPQAFHATAPAADLSVRADLAPPAGQAPDAPLKVAGQIEINNARPGSLDQQLLPL 300 DLQHLNPQAFHATAPAADLSVRADLAP AGQA DAPLKVAG+IEINNARPGSLDQQLLPL Sbjct: 241 DLQHLNPQAFHATAPAADLSVRADLAPSAGQAADAPLKVAGRIEINNARPGSLDQQLLPL 300 Query: 301 LSASADLQLDLQQQALTRLEIRLPRNGRIEGAGQFQPGSQDPAQPTPMAGRLALRVSELD 360 LSASADLQLDLQQQALTRLEIRLPRNGRIEGAGQFQPGSQDPAQPTPMAGRLALRVSELD Sbjct: 301 LSASADLQLDLQQQALTRLEIRLPRNGRIEGAGQFQPGSQDPAQPTPMAGRLALRVSELD 360 Query: 361 LSQIHHQVRPTRLSGPVEATLGPDAQQLLLTLQDSALRLHLDSTLRADTVELREASLTAG 420 LSQIHHQVRPTRLSGPVEATLGPDA+QLLLTLQDSALRLHLDSTLRADTVELREASLTAG Sbjct: 361 LSQIHHQVRPTRLSGPVEATLGPDARQLLLTLQDSALRLHLDSTLRADTVELREASLTAG 420 Query: 421 KSRLEAAGSMKTVGAMDYAFKGRLVDFDPTAVLQTVTAPTAASARRGGKTVAAIPARINL 480 KSRLEAAGSMKTVGAMDYAFKGRLVDFDPTAVLQTVTAPTAASARRGGKTVAAIPARINL Sbjct: 421 KSRLEAAGSMKTVGAMDYAFKGRLVDFDPTAVLQTVTAPTAASARRGGKTVAAIPARINL 480 Query: 481 DFNAAGLLSPELRLKLGFTIHDSSYGDLPMAGRGDIDLAGMRLLPSQAHLQVAGNTLDLN 540 DFNAAGLLSPELRLKLGFTIHDSSYGDLPMAGRGDIDLAGMRLLPSQAHLQVAGNTLDLN Sbjct: 481 DFNAAGLLSPELRLKLGFTIHDSSYGDLPMAGRGDIDLAGMRLLPSQAHLQVAGNTLDLN 540 Query: 541 GSFGAANDKLKLKIDAPQLARLGYGLSGLLRLDGQLGGTRQRPSLQASYQAEQLGFGPHK 600 GSFGAANDKLKLKIDAPQLARLGYGLSGLLRLDGQLGGTRQRPSLQASYQAEQLGFGPHK Sbjct: 541 GSFGAANDKLKLKIDAPQLARLGYGLSGLLRLDGQLGGTRQRPSLQASYQAEQLGFGPHK 600 Query: 601 LQHLAGQAEIHSNLAAGVASPENRLALTLEGDGYSGPQAELAQLAVKLDGTYAKHSLSLK 660 LQHLAGQAEIHSNLAAGVASPENRLALTLEGDGYSGPQAELAQLAVKLDGTYAKHSLSLK Sbjct: 601 LQHLAGQAEIHSNLAAGVASPENRLALTLEGDGYSGPQAELAQLAVKLDGTYAKHSLSLK 660 Query: 661 ANGKLLNRPLALTLAAHGQVTEKTRGQYGWNGSIDQLSNDGFPRIAMLHPLALQASPEAV 720 ANGKLLNRPLALTLAAHGQVTEKTRGQYGWNGSIDQLSNDGFPRIAMLHPLALQASPEAV Sbjct: 661 ANGKLLNRPLALTLAAHGQVTEKTRGQYGWNGSIDQLSNDGFPRIAMLHPLALQASPEAV 720 Query: 721 EAGSTRIEIDRTALDLRHLSWRQGRIASAGQVRALDVGRLLELAQQLGAAAPPMKTDLVL 780 EAGSTRIEIDRTALDLRHLSWRQGRIASAG+VRALDVGRLLELAQQLGAAAPPMKTDLVL Sbjct: 721 EAGSTRIEIDRTALDLRHLSWRQGRIASAGEVRALDVGRLLELAQQLGAAAPPMKTDLVL 780 Query: 781 DSDWDFSLAESARGYVQIARQSGDLRLVTSNGEATLGLSELKLRSDFQGEQMRLSGRVDA 840 DSDWDFSLAESARGYVQIARQSGDLRLVTSNGEATLGLSELKLRSDFQGEQMRLSGRVDA Sbjct: 781 DSDWDFSLAESARGYVQIARQSGDLRLVTSNGEATLGLSELKLRSDFQGEQMRLSGRVDA 840 Query: 841 SRIGTLALGGQIGLQRVDQLLTLADGSPLALNARLELPELKRIGDLIGPQVSLNGKLSAD 900 SRIGTLALGGQIGLQRVDQLLTLADGSPLALNARLELPELKRIGDLIGPQVSLNGKLSAD Sbjct: 841 SRIGTLALGGQIGLQRVDQLLTLADGSPLALNARLELPELKRIGDLIGPQVSLNGKLSAD 900 Query: 901 LNVAGTLAQPKLSGAVNGDDLAVTQFDQGIQLKDGIVRIVMDSNVIDLRQIEFHGGRGTL 960 LNVAGTLAQPKLSGAVNGDDLAVTQFDQGIQLKDGIVRIVMDSNVIDLRQIEFHGGRGTL Sbjct: 901 LNVAGTLAQPKLSGAVNGDDLAVTQFDQGIQLKDGIVRIVMDSNVIDLRQIEFHGGRGTL 960 Query: 961 RAGGKIQLGADNPDLNATLTAEQLELFASPDRRLMLSGQGKISNVNEQLHVDGKFTVDHA 1020 RAGGKIQLGADNPDLNATLTAEQLELFASPDRRLMLSGQGKISNVNEQLHVDGKFTVDHA Sbjct: 961 RAGGKIQLGADNPDLNATLTAEQLELFASPDRRLMLSGQGKISNVNEQLHVDGKFTVDHA 1020 Query: 1021 LFDLPKSSAPKLGDDVVIISRSGKNQVGGQASSKQRLEAATEKPASKFAPFINIAVDLGN 1080 LFDLPKSSAPKLGDDVVIISRSGKNQVGGQASSKQRLEAATEKPASKFAPFINIAVDLGN Sbjct: 1021 LFDLPKSSAPKLGDDVVIISRSGKNQVGGQASSKQRLEAATEKPASKFAPFINIAVDLGN 1080 Query: 1081 DFRFRGSGADLRLRGEMAVRSEPLSPMRASGTINVAEGSYEAFGTKLNIERGIINFQGPI 1140 DFRFRGSGADLRLRGEMAVRSEPLSPMRASGTINVAEGSYEAFGTKLNIERGIINFQGPI Sbjct: 1081 DFRFRGSGADLRLRGEMAVRSEPLSPMRASGTINVAEGSYEAFGTKLNIERGIINFQGPI 1140 Query: 1141 ANPNINILAMRRNQDVEAGVSVTGNANQPRVQLVSEPNVPDDEKLSWMMFGHGTDNSSIG 1200 ANPNINILAMRRNQDVEAGVSVTGNANQPRVQLVSEPNVPDDEKLSWMMFGHGTDNSSIG Sbjct: 1141 ANPNINILAMRRNQDVEAGVSVTGNANQPRVQLVSEPNVPDDEKLSWMMFGHGTDNSSIG 1200 Query: 1201 QRTASSQALALVGNMGGKRIAKDIGLDQFSIGSSESGLTNDQVVNLGKAITEKITLGYEQ 1260 QRTASSQALALVGNMGGKRIAKDIGLDQFSIGSSESGLTNDQVVNLGKAITEKITLGYEQ Sbjct: 1201 QRTASSQALALVGNMGGKRIAKDIGLDQFSIGSSESGLTNDQVVNLGKAITEKITLGYEQ 1260 Query: 1261 SLQGAASVAKATWQISRRWSVVARAGTINGLNILFNRRYD 1300 SLQGAASVAKATWQISRRWSVVARAGTINGLNILFNRRYD Sbjct: 1261 SLQGAASVAKATWQISRRWSVVARAGTINGLNILFNRRYD 1300 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.133 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 3,974,175 Number of extensions: 173849 Number of successful extensions: 550 Number of sequences better than 1.0e-08: 1 Number of HSP's gapped: 542 Number of HSP's successfully gapped: 1 Length of query: 1300 Length of database: 1,619,870 Length adjustment: 97 Effective length of query: 1203 Effective length of database: 1,160,575 Effective search space: 1396171725 Effective search space used: 1396171725 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 136 (57.0 bits)