BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0076.p (519 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310865|ref|YP_003774957.1| response regulator containing a... 1050 0.0 gi|300312843|ref|YP_003776935.1| response regulator containing a... 273 2e-74 gi|300313918|ref|YP_003778010.1| transmembrane protein [Herbaspi... 237 2e-63 gi|300313329|ref|YP_003777421.1| transmembrane protein [Herbaspi... 200 2e-52 gi|300313782|ref|YP_003777874.1| transmembrane protein [Herbaspi... 181 1e-46 >gi|300310865|ref|YP_003774957.1| response regulator containing a CheY-like receiver domain and a GGDEF domain transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 554 Score = 1050 bits (2714), Expect = 0.0, Method: Compositional matrix adjust. Identities = 517/519 (99%), Positives = 517/519 (99%) Query: 1 VILLLEAWTAWRAREVALSESTTDASNVALALIQHAEQSIKEADIVLETVQEHLDHEDRS 60 VILLLEAWTAWRAREVALSESTTDASNVALALIQHAEQSIKEADIVLETVQEHLDHEDRS Sbjct: 36 VILLLEAWTAWRAREVALSESTTDASNVALALIQHAEQSIKEADIVLETVQEHLDHEDRS 95 Query: 61 ASARIRTHDFMIRSVASLPQLAQLTVVDEQGRTVASSQQRMVQTGSPVQDDYFQYHQHRR 120 ASARIRTHDFMIRSVASLPQLAQLTVVDEQGRTVASSQQRMVQTGSPVQDDYFQYHQHRR Sbjct: 96 ASARIRTHDFMIRSVASLPQLAQLTVVDEQGRTVASSQQRMVQTGSPVQDDYFQYHQHRR 155 Query: 121 SDRPFIGQPMRSHVTGQRTLTVSRRINHVDGSFAGVIVAEIDLAYFQRYYEQFNIGPHGV 180 SDRPFIGQPMRSHVTGQRTLTVSRRINHVDGSFAGVIVAEIDLAYFQRYYEQFNIGPHGV Sbjct: 156 SDRPFIGQPMRSHVTGQRTLTVSRRINHVDGSFAGVIVAEIDLAYFQRYYEQFNIGPHGV 215 Query: 181 ILFGLTGGSLILRRPLLADMTDRSPAMSEALRKHMEQARRGSFAMRSERDGVERISCFQQ 240 ILFGLTGGSLILRRPLLADMTDRSPAMSEALRKHMEQARRGSFAMRSERDGVERISCFQQ Sbjct: 216 ILFGLTGGSLILRRPLLADMTDRSPAMSEALRKHMEQARRGSFAMRSERDGVERISCFQQ 275 Query: 241 GEAYPIFTVVALAKDDILEDWSRHVWVRGIGVVLLLAVICFGGKRLVVLVAGRERAEAQA 300 GEAYPIFTVVALAKDDILEDWSRHVWVRGIGVVLLLAVICFGGKRLVVLVAGRERAEAQA Sbjct: 276 GEAYPIFTVVALAKDDILEDWSRHVWVRGIGVVLLLAVICFGGKRLVVLVAGRERAEAQA 335 Query: 301 IAARQELESLYRTLEAQSQKDGLTDVFNRRYFDAALAAELARLNRTGESLSLMMIDVDHF 360 IAARQELESLYRTLEAQSQKDGLTDVFNRRYFDAALAAELARLNRTGESLSLMMIDVDHF Sbjct: 336 IAARQELESLYRTLEAQSQKDGLTDVFNRRYFDAALAAELARLNRTGESLSLMMIDVDHF 395 Query: 361 KQFNDTYGHAAGDVCLRQVAAAISTVARRQGDIVARYGGEEFAVILPNCHPGSAQGLAHR 420 KQFNDTYGHAAGDVCLRQVAAAISTVARRQGDIVARYGGEEFAVILPNCHPGSAQGLAHR Sbjct: 396 KQFNDTYGHAAGDVCLRQVAAAISTVARRQGDIVARYGGEEFAVILPNCHPGSAQGLAHR 455 Query: 421 VVQAVRGLEIAHERSPMGVVTISVGVASLASGKSLQIEPRELIDSADGALYRAKEEGRDR 480 VVQAVRGLEIAHERSPMGVVTISVGVASLASGKSL IEPRELIDSADGALYRAKEEGRDR Sbjct: 456 VVQAVRGLEIAHERSPMGVVTISVGVASLASGKSLLIEPRELIDSADGALYRAKEEGRDR 515 Query: 481 AVQRPFASAATPAQKATEDAAKSSLQAASGAPSDYLTVR 519 AVQRPFASAA PAQKATEDAAKSSLQAASGAPSDYLTVR Sbjct: 516 AVQRPFASAAAPAQKATEDAAKSSLQAASGAPSDYLTVR 554 >gi|300312843|ref|YP_003776935.1| response regulator containing a CheY-like receiver and a GGDEF domains protein [Herbaspirillum seropedicae SmR1] Length = 525 Score = 273 bits (699), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 181/488 (37%), Positives = 272/488 (55%), Gaps = 3/488 (0%) Query: 8 WTAWRAREVALSESTTDASNVALALIQHAEQSIKEADIVLETVQEHLDHEDRSASARIRT 67 W + AR V L + + + NVA AL +HA ++ D +L + + +D A AR+ Sbjct: 37 WQSMTARGVQLENNRSYSGNVAKALARHAYDVLQATDGLLLDMSDRIDSVG-IAHARLVD 95 Query: 68 HDFMIRSVAS-LPQLAQLTVVDEQGRTVASSQQRMVQTGSPVQDDYFQYHQHRRSDRPFI 126 M+R ++S +PQL L V DE G+ + +S + + DYF +H+ P + Sbjct: 96 LMPMLRRLSSEMPQLDGLYVFDEHGKRLLTSSAPPLAPANNSDRDYFIWHRDHDDVGPHV 155 Query: 127 GQPMRSHVTGQRTLTVSRRINHVDGSFAGVIVAEIDLAYFQRYYEQFNIGPHGVILFGLT 186 G+ + S TG+ + +SRR+NH DGSFAGV++A +D+ +F + Y IG G I L Sbjct: 156 GKALLSRSTGRWIIPMSRRLNHPDGSFAGVLLATLDINHFNQLYRTVEIGKGGSIALLLR 215 Query: 187 GGSLILRRPLLADMTDRSPAMSEALRKHMEQARRGSFAMRSERDGVERISCFQQGEAYPI 246 G+L+ R P +R + + + + G + S D +R +Q + YP+ Sbjct: 216 DGTLLTRMPFDPGYINRDFSQGRLFLEGLPHSPFGYLEVVSPLDARQRFLSYQAVDKYPL 275 Query: 247 FTVVALAKDDILEDWSRHVWVRGIGVVLLLAVICFGGKRLVVLVAGRERAEAQAIAARQE 306 VV LA+++ L DW + +V G V+LLLA+I G RLV + R RAE +A+ A E Sbjct: 276 VLVVTLAREEALADWKQQTFVYGAAVLLLLAIIGVFGWRLVGQIELRLRAEDRALQAMGE 335 Query: 307 LESLYRTLEAQSQKDGLTDVFNRRYFDAALAAELARLNRTGESLSLMMIDVDHFKQFNDT 366 L+ LE + +DGLT + NRR+ D L E R R+G +L+L+MIDVD FKQ+ND Sbjct: 336 LQMANHRLEMLAHQDGLTGLANRRHLDTMLETEFKRAERSGAALALIMIDVDFFKQYNDL 395 Query: 367 YGHAAGDVCLRQVAAAISTVARRQGDIVARYGGEEFAVILPNCHPGSAQGLAHRVVQAVR 426 YGH AGD CLR+VA + RR GD+ ARYGGEE A++LP A +A ++ ++ Sbjct: 396 YGHQAGDECLRRVAGVLKERQRRPGDLAARYGGEEMAMLLPGTDAEGACAVAEKLRAGIQ 455 Query: 427 GLEIAHERSPMGVVTISVGVASLASGKSLQIEPRELIDSADGALYRAKEEGRDRA-VQRP 485 LE+ H +P+GVVT+SVGV +L S + L+ +AD ALY AK EGR++ + P Sbjct: 456 ALELPHRGNPVGVVTVSVGVCALELLPSAARSVQALLGAADAALYEAKHEGRNQVRLAAP 515 Query: 486 FASAATPA 493 +A + A Sbjct: 516 MKTAPSGA 523 >gi|300313918|ref|YP_003778010.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 237 bits (604), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 161/492 (32%), Positives = 261/492 (53%), Gaps = 34/492 (6%) Query: 1 VILLLEAWTAWRAREVALSESTTDASNVALALIQHAEQSIKEADIVLETVQEHLDHEDRS 60 +++ + A T +++ + + ++ASNV L + ++++ + L+T+ H Sbjct: 39 MVMAISASTLYQSYQQTRQSAVSNASNVTLVSQRAISRNLEMLSLSLDTLAYRFQH---P 95 Query: 61 ASARIRTHD-----FMIRSVASLPQLAQLTVVDEQGRTVASSQQRMVQ-TGSPVQDD--Y 112 SAR R +D ++ S ++ +A + V+D GR SS R+ + G+P D Y Sbjct: 96 LSAR-RLNDAQRYAYLFGSTTNVSHIAVMAVLDADGRVQVSS--RLGRGNGAPHYADRAY 152 Query: 113 FQYHQHRRSDRPFIGQPMRSHVTGQ-RTLTVSRRINHVDGSFAGVIVAEIDLAYFQRYYE 171 F H+ + ++ +PM++ + + + + +S+R+++ DGSFAGV+V +DLAYF+ +E Sbjct: 153 FIAHRDSPTVGLYVSRPMQASLGNELQVVVLSKRLSNEDGSFAGVVVMALDLAYFRELFE 212 Query: 172 QFNIGPHGVILFGLTGGSLILRRPLLADMTDRSPAMSEALRK--HMEQARRGSFAMRSER 229 +G G+I G +R P + R + + ++ M GSF + Sbjct: 213 GLALGDEGIISLYSDEGIAYMRVPYRETIIGRDISQTGNFQRLRAMLSEEEGSFFAHATN 272 Query: 230 DGVERISCFQQGEAYPIFTVVALAKDDILEDWSRHVWVRGIGVVLLLAVICFGGKRLVVL 289 DGV R+ F++ P+ V A++ I + W + + +L+++ FG +L Sbjct: 273 DGVRRLYTFRRIPGSPLIVFVGYAEEAIFKTWRKTFYA------VLVSLAIFGLLTAWLL 326 Query: 290 VAGRERAEAQAIAARQELESLYRTLEAQSQKDGLTDVFNRRYFDAALAAELARLNRT-GE 348 + R+ + A RQ LEA ++ DGLTD+ NRR D AL A R R G Sbjct: 327 LHVRQELRRRVTAERQ--------LEALARTDGLTDLLNRRALDEALQATWERCQRNLGA 378 Query: 349 SLSLMMIDVDHFKQFNDTYGHAAGDVCLRQVAAAISTVARRQGDIVARYGGEEFAVILPN 408 S S++ IDVD+FK +NDTYGH GD L++VAA ++ R D RYGGEEF V+L Sbjct: 379 SFSVLFIDVDYFKAYNDTYGHKLGDTVLKEVAATLTARLPRHTDCAGRYGGEEFVVLLEQ 438 Query: 409 CHPGSAQGLAHRVVQAVRGLEIAHERSPMGVVTISVGVASLASGKSLQIEPRELIDSADG 468 AQ +A R+ AVR IAH SP+ VVTISVGVA+L ++E +++++AD Sbjct: 439 TDLQGAQMMAQRLCDAVRERHIAHTSSPLAVVTISVGVATLERDHHRRVE--DVLNAADA 496 Query: 469 ALYRAKEEGRDR 480 ALYRAK+ GRDR Sbjct: 497 ALYRAKQAGRDR 508 >gi|300313329|ref|YP_003777421.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 501 Score = 200 bits (509), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 137/471 (29%), Positives = 245/471 (52%), Gaps = 31/471 (6%) Query: 21 STTDASNVALALIQHAEQSIKEADIVLETVQEHLDHE-DRSASARIRTHDFMIRSVASLP 79 + T+A+NV L + + ++++ + ++T+ H D + ++ ++++ S A+ Sbjct: 38 AITEANNVTLIVQRAISRNMEILSLAMDTLAYRYQHPLDLTHASDEERYNYLFGSTAAAH 97 Query: 80 QLAQLTVVDEQGRTVASSQQRMVQTGSPV------QDDYFQYHQHRRSDRPFIGQPMRSH 133 + L ++D G +S++ + SP + YF H+ FI +P++++ Sbjct: 98 HITALAILDADGYVRVTSRR----SASPSVVVNYSERTYFTVHRDSADAGLFISRPIKAN 153 Query: 134 VTGQRTLTV-SRRINHVDGSFAGVIVAEIDLAYFQRYYEQFNIGPHGVILFGLTGGSLIL 192 + + + V S+R++ DGSF GV++ +D++YF+ + +G G++ G + Sbjct: 154 LGNELPVVVLSKRLSRKDGSFDGVVLMALDMSYFRDLFTGLTLGEDGIMSLYSDDGVTYM 213 Query: 193 RRPLLADMTDRSPAMSEALRK--HMEQARRGSFAMRSERDGVERISCFQQGEAYPIFTVV 250 R P R + ++ M G+F R+ DGVER+ F++ P+ ++ Sbjct: 214 RVPYHPSSIGREITNNPNFQRLRAMLVDNDGNFFARAHTDGVERLYTFRRIPDAPLIVLL 273 Query: 251 ALAKDDILEDWSRHVWVRGIGVVLLLAVICFGGKRLVVLVAGRERAEAQAIAARQELESL 310 ++ I + W ++ V+LLL + L++LV R + +AA ++LE L Sbjct: 274 GRSERFIFKTWYDTLY----SVLLLLIIFTALAGVLLMLV---RRELLKRVAAEKQLEDL 326 Query: 311 YRTLEAQSQKDGLTDVFNRRYFDAALAAELARLNRTGES-LSLMMIDVDHFKQFNDTYGH 369 RT DGLT + NRR D AL A R R+ + S + IDVD+FK++NDTYGH Sbjct: 327 ART-------DGLTGLLNRRSLDEALLAVWQRSQRSPTAGFSTLFIDVDYFKRYNDTYGH 379 Query: 370 AAGDVCLRQVAAAISTVARRQGDIVARYGGEEFAVILPNCHPGSAQGLAHRVVQAVRGLE 429 GD L+ VAA + +RQ D+ RYGGEEF V+L A +A ++ +A+ Sbjct: 380 EMGDTVLQAVAAVLREHLQRQNDLAGRYGGEEFVVLLEQTDEHGALRMAQQLCEAIYNRG 439 Query: 430 IAHERSPMGVVTISVGVASLASGKSLQIEPRELIDSADGALYRAKEEGRDR 480 I H SP+GV+++S+GVA++ ++E +++++AD ALY AK EGR+R Sbjct: 440 IPHSGSPLGVISVSIGVATMNRAPHQRME--DVLNAADHALYIAKREGRNR 488 >gi|300313782|ref|YP_003777874.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 475 Score = 181 bits (458), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 134/411 (32%), Positives = 204/411 (49%), Gaps = 30/411 (7%) Query: 81 LAQLTVVDEQGR-TVASSQQRMVQTGSPVQDDYFQYHQ--HRRSDRP-FIGQPMRSHVTG 136 +A L +VD G V S+ + G Q D+F HQ H + D +I P+ + Sbjct: 81 VAALGIVDTDGELVVGSAALSQILPGPYAQSDFFTAHQTHHAQGDTGLYISAPLTVRLER 140 Query: 137 Q-RTLTVSRRINHVDGSFAGVIVAEIDLAYFQRYYEQFNIGPHGVILFGLTGGSLILRRP 195 + + + +S+R+ DGSFAG+ + + L YF+ ++ + GVI G +R P Sbjct: 141 RMQVVVLSKRLAQPDGSFAGISLMVLYLDYFRDLFQGLTLENDGVISLYSADGLAYMRIP 200 Query: 196 LLADMTDRSPAMSEALRKHMEQA--RRGSFAMRSERDGVERISCFQQ--GEAYPIFTVVA 251 +SE L + + +GS+ R+++DG + F + G + +F Sbjct: 201 YNEAFIGSRLNISEDLERIFSPSGPAQGSYFARAQQDGPRWLYTFARVPGTGWTVFIGRT 260 Query: 252 LAKDDILEDWSRHVWVRGIGVVLLLAVICFGGKRLVVLVAGRERAEAQAIAA-RQELESL 310 A+ I +W ++ V+ L+A C L+ R R E Q +A Q+LE L Sbjct: 261 GAR--IFREWYNMLY----AVLFLMASFCIASIYLI----RRVRVELQRRSALDQQLEEL 310 Query: 311 YRTLEAQSQKDGLTDVFNRRYFDAALAAELARLNRTGESL-SLMMIDVDHFKQFNDTYGH 369 RT D LT + NRR D ALA R +++ SL+ +DVD FK +NDTYGH Sbjct: 311 ART-------DKLTSLLNRRALDEALARAWKRAEENPDAIFSLLFVDVDFFKLYNDTYGH 363 Query: 370 AAGDVCLRQVAAAISTVARRQGDIVARYGGEEFAVILPNCHPGSAQGLAHRVVQAVRGLE 429 AGD L V+ I R D RYGGEEF V+L A +A R++ A++ L+ Sbjct: 364 KAGDYALMAVSRCIVAAVSRLSDQSGRYGGEEFVVLLNGTDTVGATHVAKRIISAIQSLK 423 Query: 430 IAHERSPMGVVTISVGVASLASGKSLQIEPRELIDSADGALYRAKEEGRDR 480 I HERSP ++T+S+GV SL IE +++ AD ALYRAK++GR++ Sbjct: 424 IPHERSPFDILTVSIGVTSLLREHHSSIE--DVVKDADAALYRAKQDGRNK 472 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.133 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,509,316 Number of extensions: 59865 Number of successful extensions: 358 Number of sequences better than 1.0e-08: 41 Number of HSP's gapped: 291 Number of HSP's successfully gapped: 42 Length of query: 519 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 430 Effective length of database: 1,198,455 Effective search space: 515335650 Effective search space used: 515335650 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)