BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0074.p (497 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310863|ref|YP_003774955.1| ABC transporter containing dupl... 944 0.0 gi|300312716|ref|YP_003776808.1| ABC transporter duplicated ATPa... 214 9e-57 gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbasp... 189 4e-49 gi|300310466|ref|YP_003774558.1| dipeptide/oligopeptide/nickel A... 172 7e-44 gi|300310895|ref|YP_003774987.1| dipeptide/oligopeptide/nickel A... 129 5e-31 >gi|300310863|ref|YP_003774955.1| ABC transporter containing duplicated ATPase [Herbaspirillum seropedicae SmR1] Length = 493 Score = 944 bits (2440), Expect = 0.0, Method: Compositional matrix adjust. Identities = 484/491 (98%), Positives = 486/491 (98%) Query: 1 MNASLPLDALRVEDLTVWHGQQPLVGGVSFAVPAGGVLSLLGESGSGKSLLAQAIMGNLP 60 MNASLPLDALRVEDLTVWHGQQPLVGGVSFAVP GGVLSLLGESGSGKSLLAQAIMGNLP Sbjct: 1 MNASLPLDALRVEDLTVWHGQQPLVGGVSFAVPVGGVLSLLGESGSGKSLLAQAIMGNLP 60 Query: 61 ASLRATGAIFQAGQHSDAADGRSRQSGWGRRIALLPQEPWLALDPTMTVARQVAETYELV 120 ASLRATG+I AGQ+SDAADGRSRQSGWGRRIALLPQEPWLALDPTMTVARQVAETYELV Sbjct: 61 ASLRATGSISLAGQYSDAADGRSRQSGWGRRIALLPQEPWLALDPTMTVARQVAETYELV 120 Query: 121 SQSAPDQQNESLRRARSQAAASARRALASLGLEAAADKYPFMISGGMAQRVAFLATHAAG 180 SQSAPDQQNESLRRARSQAAASARRALASLGLEAAADKYPFMISGGMAQRVAFLATHAAG Sbjct: 121 SQSAPDQQNESLRRARSQAAASARRALASLGLEAAADKYPFMISGGMAQRVAFLATHAAG 180 Query: 181 APLMIIDEPTKGLDVDRRGEVLALLQAAQAEGVSLLCITHDVWLARALGGQLAVLQDGAM 240 APLMIIDEPTKGLDVDRRGEVLALLQAAQAEGVSLLCITHDVWLARALGGQLAVLQDGAM Sbjct: 181 APLMIIDEPTKGLDVDRRGEVLALLQAAQAEGVSLLCITHDVWLARALGGQLAVLQDGAM 240 Query: 241 VEQGSAEALLAQPRHAYTRRLLGADPACWPLPEVRTPRADAAVIAELREISKSFGEQALF 300 VEQGSAEALLAQPRHAYTRRLLGADPACWPLPEVRTPRADAAVIAELREISKSFGEQALF Sbjct: 241 VEQGSAEALLAQPRHAYTRRLLGADPACWPLPEVRTPRADAAVIAELREISKSFGEQALF 300 Query: 301 AGVSARLHAGEVVAVSGPSGSGKTSLGNILLGLLQPDSGQVLRAPGLPRTAFQKIYQDPA 360 AGVSARLHAGEVVAVSGPSGSGKTSLGNILLGLLQPDSGQVLRAPGLPRTAFQKIYQDPA Sbjct: 301 AGVSARLHAGEVVAVSGPSGSGKTSLGNILLGLLQPDSGQVLRAPGLPRTAFQKIYQDPA 360 Query: 361 AAFAPSIPLRRSLQDLVRLHGLSWQELEALLERMRIAPALLDRLPRQVSGGELQRIALAR 420 AAFAPSIPLRRSLQDLVRLHGL WQELEALLERMRIAPALLDRLPRQVSGGELQRIALAR Sbjct: 361 AAFAPSIPLRRSLQDLVRLHGLPWQELEALLERMRIAPALLDRLPRQVSGGELQRIALAR 420 Query: 421 VLLMKPALIFADEPTSRLDPLTQQEVMALLVEQARAAGSAVLLVTHDADIVRCVADRRLT 480 VLLMKPALIFADEPTSRLDPLTQQEVMALLVEQARA GSAVLLVTHDADIVRCVADRRLT Sbjct: 421 VLLMKPALIFADEPTSRLDPLTQQEVMALLVEQARAVGSAVLLVTHDADIVRCVADRRLT 480 Query: 481 LSPAGQSQSQP 491 LSPAGQSQSQP Sbjct: 481 LSPAGQSQSQP 491 >gi|300312716|ref|YP_003776808.1| ABC transporter duplicated ATPase [Herbaspirillum seropedicae SmR1] Length = 529 Score = 214 bits (546), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 171/504 (33%), Positives = 258/504 (51%), Gaps = 47/504 (9%) Query: 10 LRVEDLTVWHGQQPLVGGVSFAVPAGGVLSLLGESGSGKSLLAQAIMGNLPASLRATGAI 69 L V +LTV G +V VSFA+ G +L+GESGSGK++ + A+M L R G+I Sbjct: 6 LEVNNLTVRFGDTVVVDRVSFAIAPGEKFALVGESGSGKTVSSLAVM-QLNQDARYEGSI 64 Query: 70 FQAGQHSDAADGRSRQSGWGRRIALLPQEPWLALDPTMTVARQVAET---YELVSQSAPD 126 GQ A R Q G +A++ QEP AL+P T+ Q+AE +E ++ Sbjct: 65 LLDGQDVLAKSERQMQQVRGNDVAMIFQEPMTALNPLFTIGNQIAEVLMHHEGLNARDAA 124 Query: 127 QQNESLRRARSQAAASARRALASLGLEAAADKYPFMISGGMAQRVAFLATHAAGAPLMII 186 ++ +L ++ ARRAL+ YP +SGG QR A L+I Sbjct: 125 RRAVALLE-KTGIPEPARRALS----------YPHELSGGQRQRAMIAMALACKPKLLIA 173 Query: 187 DEPTKGLDVDRRGEVLALL-QAAQAEGVSLLCITHDVWLARALGGQLAVLQDGAMVEQGS 245 DEPT LDV + ++LALL Q + E +++L I+HD+ L R ++ V++ G +VE S Sbjct: 174 DEPTTALDVTIQVQILALLNQLQREENMAVLIISHDLNLVRHFADRVGVMEKGKLVESAS 233 Query: 246 AEALLAQPRHAYTRRLLGADP--ACWPLPEVRTPRADAAVIAELREISKS-FGEQALFA- 301 L A P+ YTR+LL + P + A + I + F ++A A Sbjct: 234 VAELFANPQQPYTRKLLQSRPQRNAADVAADAPVVLQAERLRCTYHIKQGWFAKRAFHAV 293 Query: 302 -GVSARLHAGEVVAVSGPSGSGKTSLGNILLGLLQPDSGQVLRAPGLP------------ 348 GV +L GE + + G SGSGK++LG LL L +R G+P Sbjct: 294 DGVDLQLRRGETLGIVGESGSGKSTLGMALLRLSAASVAGSIRFDGVPISERPQRELRPL 353 Query: 349 RTAFQKIYQDPAAAFAPSIPLRRSLQDLV----RLHG------LSWQELEALLERMRIAP 398 R+ Q ++QDP A+ +P RR+++ +V LH Q + A LE + ++ Sbjct: 354 RSRMQVVFQDPFASLSP----RRTVEQIVGEGLELHHPDRSAEQQRQAIVAALEEVGLSA 409 Query: 399 ALLDRLPRQVSGGELQRIALARVLLMKPALIFADEPTSRLDPLTQQEVMALLVEQARAAG 458 A+L+R P + SGG+ QRIA+AR L+++P L+ DEPTS LD QQ+V+ LL E R G Sbjct: 410 AVLERYPHEFSGGQRQRIAIARALVLQPELLLLDEPTSALDVTVQQQVLQLLAELQRRHG 469 Query: 459 SAVLLVTHDADIVRCVADRRLTLS 482 A L +THD +V+ +A + + + Sbjct: 470 LAYLFITHDLAVVQAMAHQVIVMK 493 Score = 109 bits (273), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 85/244 (34%), Positives = 126/244 (51%), Gaps = 23/244 (9%) Query: 25 VGGVSFAVPAGGVLSLLGESGSGKSLLAQAIM----GNLPASLRATGAIFQAGQHSDAAD 80 V GV + G L ++GESGSGKS L A++ ++ S+R G + Sbjct: 293 VDGVDLQLRRGETLGIVGESGSGKSTLGMALLRLSAASVAGSIRFDGVPISERPQRELRP 352 Query: 81 GRSRQSGWGRRIALLPQEPWLALDPTMTVARQVAETYELVSQSAPDQQNESLRRARSQAA 140 RSR + ++ Q+P+ +L P TV + V E EL PD+ E R+A Sbjct: 353 LRSR-------MQVVFQDPFASLSPRRTVEQIVGEGLEL---HHPDRSAEQQRQA----- 397 Query: 141 ASARRALASLGLEAAA-DKYPFMISGGMAQRVAFLATHAAGAPLMIIDEPTKGLDVDRRG 199 AL +GL AA ++YP SGG QR+A L+++DEPT LDV + Sbjct: 398 --IVAALEEVGLSAAVLERYPHEFSGGQRQRIAIARALVLQPELLLLDEPTSALDVTVQQ 455 Query: 200 EVLALLQAAQA-EGVSLLCITHDVWLARALGGQLAVLQDGAMVEQGSAEALLAQPRHAYT 258 +VL LL Q G++ L ITHD+ + +A+ Q+ V++DG +VE G+ +L QP+ YT Sbjct: 456 QVLQLLAELQRRHGLAYLFITHDLAVVQAMAHQVIVMKDGKVVESGATAQVLQQPQQEYT 515 Query: 259 RRLL 262 RRL+ Sbjct: 516 RRLV 519 Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 111/222 (50%), Gaps = 29/222 (13%) Query: 281 AAVIAELREISKSFGEQALFAGVSARLHAGEVVAVSGPSGSGKT--SL------------ 326 +A + E+ ++ FG+ + VS + GE A+ G SGSGKT SL Sbjct: 2 SAALLEVNNLTVRFGDTVVVDRVSFAIAPGEKFALVGESGSGKTVSSLAVMQLNQDARYE 61 Query: 327 GNILL---GLLQPDSGQVLRAPGLPRTAFQKIYQDPAAAFAPSIPLRRSLQDLVRLH-GL 382 G+ILL +L Q+ + G I+Q+P A P + + +++ H GL Sbjct: 62 GSILLDGQDVLAKSERQMQQVRG---NDVAMIFQEPMTALNPLFTIGNQIAEVLMHHEGL 118 Query: 383 S----WQELEALLERMRIAPALLDR---LPRQVSGGELQRIALARVLLMKPALIFADEPT 435 + + ALLE+ I P R P ++SGG+ QR +A L KP L+ ADEPT Sbjct: 119 NARDAARRAVALLEKTGI-PEPARRALSYPHELSGGQRQRAMIAMALACKPKLLIADEPT 177 Query: 436 SRLDPLTQQEVMALLVEQARAAGSAVLLVTHDADIVRCVADR 477 + LD Q +++ALL + R AVL+++HD ++VR ADR Sbjct: 178 TALDVTIQVQILALLNQLQREENMAVLIISHDLNLVRHFADR 219 >gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 617 Score = 189 bits (480), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 156/515 (30%), Positives = 254/515 (49%), Gaps = 73/515 (14%) Query: 25 VGGVSFAVPAGGVLSLLGESGSGKSLLAQAIM-----GNLPASLRATGAIFQAGQHSD-- 77 V +SF V G L+++GESGSGKS+ + AIM G + + + ++GQ D Sbjct: 27 VRDLSFHVDQGETLAIVGESGSGKSVSSLAIMRLIEHGGGKIASGSMQFLRRSGQRLDLA 86 Query: 78 AADGRSRQSGWGRRIALLPQEPWLALDPTMTVARQVAETYELVSQSAPDQQNESLRRARS 137 AD + +S G IA++ QEP +L+P TV Q+AE+ L ++ L RA + Sbjct: 87 QADNATMRSIRGAEIAMIFQEPMTSLNPVFTVGEQIAESIRL---------HQGLGRAAA 137 Query: 138 QAAASARRALASLGLEAAA---DKYPFMISGGMAQRVAFLATHAAGAPLMIIDEPTKGLD 194 QA A R L + + A ++P +SGGM QRV + L+I DEPT LD Sbjct: 138 QA--EALRMLEMVRIPEAKRVLGRHPHQLSGGMRQRVMIAMALSCKPSLLIADEPTTALD 195 Query: 195 VDRRGEVLALLQAAQAE-GVSLLCITHDVWLARALGGQLAVLQDGAMVEQGSAEALLAQP 253 V + ++L L+++ Q E + ++ ITHD+ + + ++ V+ G VE+ + L A P Sbjct: 196 VTIQAQILQLIRSLQQEMQMGVIFITHDMGVVAEVADRVVVMCRGEKVEENAVNPLFAAP 255 Query: 254 RHAYTRRLLGADPAC-------WPLPEVRTPRADA-------------------AVIAEL 287 H YT+ LL A P PL P+A+A I ++ Sbjct: 256 AHPYTQSLLAAVPRLGSMRGTDKPLRFGIAPQAEARPDLIASELQAQAEIAAQRQPILKV 315 Query: 288 REISKSFG-EQALFAGVSARLHA----------GEVVAVSGPSGSGKTSLGNILLGLLQP 336 R+++ F + +F V R+HA GE +A+ G SG GK++ G LL L+ Sbjct: 316 RDLTTRFDVKSGIFGRVRQRVHAVEKVSFDLYAGETLAIVGESGCGKSTTGRSLLRLVDI 375 Query: 337 DSGQVLRA----PGLPRTAF-------QKIYQDPAAAFAPSIPLRRSLQDLVRLHGL--- 382 G+V LPR+ Q I+QDP A+ P + + S+ + + +HG+ Sbjct: 376 AGGKVEFGGRDLAQLPRSELRQLRRDIQFIFQDPFASLDPRMTVGYSIMEPMLVHGMKEG 435 Query: 383 SWQELEALLERMRIAPALLDRLPRQVSGGELQRIALARVLLMKPALIFADEPTSRLDPLT 442 + + ++ALL R+ + P R P + SGG+ QRI +AR L + P ++ ADE S LD Sbjct: 436 AQERVDALLTRVGLTPEHGQRYPHEFSGGQRQRICIARALALNPKIVIADESVSALDVSI 495 Query: 443 QQEVMALLVEQARAAGSAVLLVTHDADIVRCVADR 477 Q +++ L+++ G + + ++HD +V ++ R Sbjct: 496 QAQIVNLMLDLQAELGISFIFISHDMAVVERISHR 530 Score = 98.6 bits (244), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 74/250 (29%), Positives = 120/250 (48%), Gaps = 23/250 (9%) Query: 25 VGGVSFAVPAGGVLSLLGESGSGKSLLAQAIMGNLPASLRATGAIFQAGQHSDAADGRSR 84 V VSF + AG L+++GESG GKS ++++ + + G + G A RS Sbjct: 339 VEKVSFDLYAGETLAIVGESGCGKSTTGRSLLRLVDIA----GGKVEFGGRDLAQLPRSE 394 Query: 85 QSGWGRRIALLPQEPWLALDPTMTVARQVAETYEL--VSQSAPDQQNESLRRARSQAAAS 142 R I + Q+P+ +LDP MTV + E + + + A ++ + L R Sbjct: 395 LRQLRRDIQFIFQDPFASLDPRMTVGYSIMEPMLVHGMKEGAQERVDALLTR-------- 446 Query: 143 ARRALASLGLE-AAADKYPFMISGGMAQRVAFLATHAAGAPLMIIDEPTKGLDVDRRGEV 201 +GL +YP SGG QR+ A ++I DE LDV + ++ Sbjct: 447 -------VGLTPEHGQRYPHEFSGGQRQRICIARALALNPKIVIADESVSALDVSIQAQI 499 Query: 202 LALLQAAQAE-GVSLLCITHDVWLARALGGQLAVLQDGAMVEQGSAEALLAQPRHAYTRR 260 + L+ QAE G+S + I+HD+ + + ++AV+ G +VE G A+ P+H YTR+ Sbjct: 500 VNLMLDLQAELGISFIFISHDMAVVERISHRVAVMYLGQIVEIGPRRAIFENPQHPYTRK 559 Query: 261 LLGADPACWP 270 L+ A P P Sbjct: 560 LMAAVPVADP 569 >gi|300310466|ref|YP_003774558.1| dipeptide/oligopeptide/nickel ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 645 Score = 172 bits (435), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 155/515 (30%), Positives = 243/515 (47%), Gaps = 40/515 (7%) Query: 10 LRVEDLTVWHGQQPLVGGVSFAVPAGGVLSLLGESGSGKSLLAQAIMGNLPASLRATGAI 69 LRV Q +V V+F V G VL+L+GESGSGK+ +A +++G A G Sbjct: 34 LRVNARKEDGSQVEIVKNVNFTVARGEVLALIGESGSGKTTIALSLLGYARAGCHIAGGQ 93 Query: 70 FQAGQHS-DAADGRSRQSGWGRRIALLPQEPWLALDPTMTVARQVAETYELVSQSAPDQQ 128 + G+ D D ++ + G +A + Q A +P T+ QV E+ Q + Sbjct: 94 VRIGERQIDQMDEKALLAMRGHHVAYIAQSAAAAFNPARTLMDQVIES---ALQHGVMDK 150 Query: 129 NESLRRARSQAAASARRALASLGLEAAADKYPFMISGGMAQRVAFLATHAAGAPLMIIDE 188 ++R+A RALA + ++YP +SGG QRV G L+I+DE Sbjct: 151 ASAMRKA-----VELFRALALPNPDKIGERYPHQVSGGQLQRVMAAMALVTGPELVILDE 205 Query: 189 PTKGLDVDRRGEVL-ALLQAAQAEGVSLLCITHDVWLARALGGQLAVLQDGAMVEQGSAE 247 PT LDV + EVL A + G + + ++HD+ + + ++ VL+DGA+ E GS Sbjct: 206 PTTALDVTTQIEVLRAFKNVVKELGTTAVYVSHDLAVVAQMADRIIVLRDGAVRETGSTS 265 Query: 248 ALLAQPRHAYTRRLLGA-DPA--CWPLPEVRTPRADAAVIAELREIS---KSFGEQA--- 298 +L P +YT+ LL A PA L E+ A A L IS +G Sbjct: 266 QVLHAPADSYTQCLLAAASPAARVVQLREILPATLPAEARAPLLRISGLVAGYGAPDRLG 325 Query: 299 -----LFAGVSARLHAGEVVAVSGPSGSGKTSLGNILLGLLQPDSGQV-----LRAP--- 345 + ++ + G V + G SGSGKT+L + G++ P G + +P Sbjct: 326 LPGVRILDDINLTIQRGSTVGIIGESGSGKTTLARAVAGMIAPARGSIQLDGETLSPTLE 385 Query: 346 GLPRTAFQKI---YQDPAAAFAPSIPLRRSLQD-LVRLHGLSWQELE----ALLERMRIA 397 G R F+++ +Q+ A PS + R L L HGL + + LL+ +++ Sbjct: 386 GRTREQFRRVQIVFQNADTALNPSHSIGRILNRPLSFYHGLKGEAMRRRTAELLDLVQLP 445 Query: 398 PALLDRLPRQVSGGELQRIALARVLLMKPALIFADEPTSRLDPLTQQEVMALLVEQARAA 457 ++DRLP ++SGG+ QR+ LAR L KP LI DE TS LD + ++ LL E R Sbjct: 446 ATVIDRLPAELSGGQKQRVNLARALAAKPDLILCDEVTSALDTVVAAAILELLAELRREL 505 Query: 458 GSAVLLVTHDADIVRCVADRRLTLSPAGQSQSQPQ 492 + + ++HD VR + D + L ++P+ Sbjct: 506 QVSYMFISHDISTVRAICDDIVVLYAGRMVANRPR 540 Score = 88.6 bits (218), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 84/280 (30%), Positives = 133/280 (47%), Gaps = 31/280 (11%) Query: 3 ASLPLDA----LRVEDLTVWHGQQPLVG--------GVSFAVPAGGVLSLLGESGSGKSL 50 A+LP +A LR+ L +G +G ++ + G + ++GESGSGK+ Sbjct: 298 ATLPAEARAPLLRISGLVAGYGAPDRLGLPGVRILDDINLTIQRGSTVGIIGESGSGKTT 357 Query: 51 LAQAIMGNLPASLRATGAIFQAGQH-SDAADGRSRQSGWGRRIALLPQEPWLALDPTMTV 109 LA+A+ G + A G+I G+ S +GR+R+ RR+ ++ Q AL+P+ ++ Sbjct: 358 LARAVAGMIAP---ARGSIQLDGETLSPTLEGRTREQF--RRVQIVFQNADTALNPSHSI 412 Query: 110 ARQVAETYELVSQSAPDQQNESLRRARSQAAASARRALASLGLEAAA-DKYPFMISGGMA 168 R + + E++RR ++ L + L A D+ P +SGG Sbjct: 413 GRILNRPLSFYH----GLKGEAMRRRTAEL-------LDLVQLPATVIDRLPAELSGGQK 461 Query: 169 QRVAFLATHAAGAPLMIIDEPTKGLDVDRRGEVLALLQAAQAE-GVSLLCITHDVWLARA 227 QRV AA L++ DE T LD +L LL + E VS + I+HD+ RA Sbjct: 462 QRVNLARALAAKPDLILCDEVTSALDTVVAAAILELLAELRRELQVSYMFISHDISTVRA 521 Query: 228 LGGQLAVLQDGAMVEQGSAEALLAQPRHAYTRRLLGADPA 267 + + VL G MV EA++A P H Y+ LL + PA Sbjct: 522 ICDDIVVLYAGRMVANRPREAMMAPPYHPYSHLLLSSVPA 561 Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 110/256 (42%), Gaps = 41/256 (16%) Query: 270 PLPEVRTPRADAAVIAELREISKSFGEQA-LFAGVSARLHAGEVVAVSGPSGSGKTSLGN 328 PL EV+ R +A K G Q + V+ + GEV+A+ G SGSGKT++ Sbjct: 27 PLVEVQGLRVNA---------RKEDGSQVEIVKNVNFTVARGEVLALIGESGSGKTTIAL 77 Query: 329 ILLGLLQPDSGQVLRAPGLPRTAFQKIYQDPAAA-------------------FAPSIPL 369 LLG + A G R ++I Q A F P+ L Sbjct: 78 SLLGYARAGCHI---AGGQVRIGERQIDQMDEKALLAMRGHHVAYIAQSAAAAFNPARTL 134 Query: 370 RRSLQDLVRLHGLSWQELEALLERMRIAPALL--------DRLPRQVSGGELQRIALARV 421 + + HG+ + A+ + + + AL +R P QVSGG+LQR+ A Sbjct: 135 MDQVIESALQHGV-MDKASAMRKAVELFRALALPNPDKIGERYPHQVSGGQLQRVMAAMA 193 Query: 422 LLMKPALIFADEPTSRLDPLTQQEVMALLVEQARAAGSAVLLVTHDADIVRCVADRRLTL 481 L+ P L+ DEPT+ LD TQ EV+ + G+ + V+HD +V +ADR + L Sbjct: 194 LVTGPELVILDEPTTALDVTTQIEVLRAFKNVVKELGTTAVYVSHDLAVVAQMADRIIVL 253 Query: 482 SPAGQSQSQPQPQPAH 497 ++ Q H Sbjct: 254 RDGAVRETGSTSQVLH 269 >gi|300310895|ref|YP_003774987.1| dipeptide/oligopeptide/nickel ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 330 Score = 129 bits (325), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 95/270 (35%), Positives = 147/270 (54%), Gaps = 19/270 (7%) Query: 4 SLPLDALRVEDLTVWHGQQPLVGGVSFAVPAGGVLSLLGESGSGKSLLAQAIMGNLPASL 63 +L + LR T G P V VS +V G +L L+GESGSGKS+ +I+G + A Sbjct: 5 TLEVRNLRTHFFT-PEGVLPAVDDVSLSVGRGRILGLVGESGSGKSVTGFSILGMVDAPG 63 Query: 64 RATGA--IFQAGQHSDAADGRSRQSGWGRRIALLPQEPWLALDPTMTVARQVAETYELVS 121 R G +FQ G+ D S + G RIA++ Q+P + L+P + V Q+ + +++ Sbjct: 64 RIVGGEILFQ-GRDLVRMDKTSLRELQGNRIAMIFQDPMMTLNPVLKVEAQMVDA--VLA 120 Query: 122 QSAPDQQNESLRRARSQAAASARRALASLGLEAAADK---YPFMISGGMAQRVAFLATHA 178 S + +R QA AR L +G+ + ++ YP +SGGM QRVA Sbjct: 121 HS---------KVSRQQARELARDTLGMMGIASPEERLQAYPHQLSGGMRQRVAIAIAML 171 Query: 179 AGAPLMIIDEPTKGLDVDRRGEVLALLQA-AQAEGVSLLCITHDVWLARALGGQLAVLQD 237 L+I DEPT LDV + ++L+ +Q A+ G +L+ ITHD+ + L ++AV+ Sbjct: 172 HKPDLIIADEPTTALDVTIQAQILSEVQKLARQHGTALIWITHDLSVVAGLADEVAVMYA 231 Query: 238 GAMVEQGSAEALLAQPRHAYTRRLLGADPA 267 G +VEQGS +A+L P H YT+ L+G+ P+ Sbjct: 232 GRIVEQGSVDAVLDAPLHPYTQGLIGSLPS 261 Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 68/223 (30%), Positives = 110/223 (49%), Gaps = 27/223 (12%) Query: 281 AAVIAELREISKSF----GEQALFAGVSARLHAGEVVAVSGPSGSGKTSLGNILLGLLQP 336 +A+ E+R + F G VS + G ++ + G SGSGK+ G +LG++ Sbjct: 2 SALTLEVRNLRTHFFTPEGVLPAVDDVSLSVGRGRILGLVGESGSGKSVTGFSILGMVDA 61 Query: 337 DS----GQVL----RAPGLPRTAFQK--------IYQDPAAAFAPSIPLRRSLQDLVRLH 380 G++L + +T+ ++ I+QDP P + + + D V H Sbjct: 62 PGRIVGGEILFQGRDLVRMDKTSLRELQGNRIAMIFQDPMMTLNPVLKVEAQMVDAVLAH 121 Query: 381 G-LSWQELEAL----LERMRIAP--ALLDRLPRQVSGGELQRIALARVLLMKPALIFADE 433 +S Q+ L L M IA L P Q+SGG QR+A+A +L KP LI ADE Sbjct: 122 SKVSRQQARELARDTLGMMGIASPEERLQAYPHQLSGGMRQRVAIAIAMLHKPDLIIADE 181 Query: 434 PTSRLDPLTQQEVMALLVEQARAAGSAVLLVTHDADIVRCVAD 476 PT+ LD Q ++++ + + AR G+A++ +THD +V +AD Sbjct: 182 PTTALDVTIQAQILSEVQKLARQHGTALIWITHDLSVVAGLAD 224 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.132 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,497,617 Number of extensions: 62352 Number of successful extensions: 868 Number of sequences better than 1.0e-08: 120 Number of HSP's gapped: 676 Number of HSP's successfully gapped: 201 Length of query: 497 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 408 Effective length of database: 1,198,455 Effective search space: 488969640 Effective search space used: 488969640 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)