BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0071.p (519 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310860|ref|YP_003774952.1| dipeptide ABC transporter perip... 987 0.0 gi|300310897|ref|YP_003774989.1| dipeptide ABC transporter perip... 89 8e-19 gi|300311169|ref|YP_003775261.1| dipeptide ABC transporter perip... 71 2e-13 >gi|300310860|ref|YP_003774952.1| dipeptide ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 987 bits (2552), Expect = 0.0, Method: Compositional matrix adjust. Identities = 515/527 (97%), Positives = 516/527 (97%), Gaps = 8/527 (1%) Query: 1 LLFTPLAATLIASPWHAALAHGDEAGHAHGDIAHAGKDMLTVVGPWELTGLDPTRSGYMF 60 LLFTPLAATL ASPWHAALAHGDEAGHAHGDIAHAGKDMLTVVGPWELTGLDPTRSGYMF Sbjct: 16 LLFTPLAATLSASPWHAALAHGDEAGHAHGDIAHAGKDMLTVVGPWELTGLDPTRSGYMF 75 Query: 61 ARMEVLETLLEVDDAGQLQPSLASAWSVSADGLQWRFVLRSGLRYHDGSALTPASILACL 120 ARMEVLETLLEVDDAGQLQPS+ASAWSVSADGLQWRFVLRSGLRYHDGSALTPASILACL Sbjct: 76 ARMEVLETLLEVDDAGQLQPSVASAWSVSADGLQWRFVLRSGLRYHDGSALTPASILACL 135 Query: 121 QRAQARPGVLRLADIAALRVEGQTLVVVLRRPFGPLPYLLTHYTTQILAPASFDAQGNVV 180 QRAQARPGVLRLADIAALRVEGQTLVVVLRRPFGPLPYLLTHYTTQILAPASFDAQGNVV Sbjct: 136 QRAQARPGVLRLADIAALRVEGQTLVVVLRRPFGPLPYLLTHYTTQILAPASFDAQGNVV 195 Query: 181 AINGSGPFRIRSIALPQQFEVERVAGS--------DVGKVVQRARYISVSRAETRTLLVQ 232 AI GSGPFRIRSIALPQQFEVERVAGS DVGKVVQRARYISVSRAETRTLLVQ Sbjct: 196 AIIGSGPFRIRSIALPQQFEVERVAGSVSGSGAGSDVGKVVQRARYISVSRAETRTLLVQ 255 Query: 233 SGQADLAFSLDPPSIRALQDSPRASLLSAMLPRTTLLKLNAGHPLLADVRVRRAISLCIE 292 SGQADLAFSLDPPSIRALQDSPRASLLSAMLPRTTLLKLNAGHPLLADVRVRRAISLCIE Sbjct: 256 SGQADLAFSLDPPSIRALQDSPRASLLSAMLPRTTLLKLNAGHPLLADVRVRRAISLCIE 315 Query: 293 REGIARALLRDPDLGATQLFPPSLARWHDAALAPLRTNLQQACSLLDQAGWRPGSDGVRR 352 REGIARALLRDPDLGATQLFPPSLARWHDAALAPLRTNLQQA SLLDQAGWRPGSDGVRR Sbjct: 316 REGIARALLRDPDLGATQLFPPSLARWHDAALAPLRTNLQQARSLLDQAGWRPGSDGVRR 375 Query: 353 RDGQRMALNLTTFVDRPELPLIATALQEEMRQIGMAVRVVIGNSSDIPAGHRSGQLQMAL 412 RDGQRMALNLTTFVDRPELPLIATALQEEMRQIGMAVRVVIGNSSDIPAGHRSGQLQMAL Sbjct: 376 RDGQRMALNLTTFVDRPELPLIATALQEEMRQIGMAVRVVIGNSSDIPAGHRSGQLQMAL 435 Query: 413 AARNYGNLPDPVASLLQDFGPQGGDWGAMGWDNQEVPALLARLAATPADAAAKGNAERAR 472 AARNYGNLPDPVASLLQDFGPQGGDWGAMGWDNQEVPALLARLAATPADAAAKGNAERAR Sbjct: 436 AARNYGNLPDPVASLLQDFGPQGGDWGAMGWDNQEVPALLARLAATPADAAAKGNAERAR 495 Query: 473 IVALLQEQLPVIPVVWYRQTCAVSRRVRGASIDPFERSYRISSLQWT 519 IVALLQEQLPVIPVVWYRQTCAVSRRVRGASIDPFERSYRISSLQWT Sbjct: 496 IVALLQEQLPVIPVVWYRQTCAVSRRVRGASIDPFERSYRISSLQWT 542 >gi|300310897|ref|YP_003774989.1| dipeptide ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 528 Score = 89.0 bits (219), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 120/491 (24%), Positives = 207/491 (42%), Gaps = 58/491 (11%) Query: 48 LTGLDPTRSGYMFARMEVLE--TLLEVDDAGQLQPSLASAWSVSADGLQWRFVLRSGLRY 105 L+ LDP + + R L LL +D +L P LA +W + D W F LR +++ Sbjct: 39 LSSLDPQLNNHAGDRSVDLHFWDLLVQNDYNKLVPGLAVSWK-NIDPKTWEFKLRPNVKW 97 Query: 106 HDGSALTPASILACLQRAQARP-------GVLRLADIAALRVEGQTLVVVLRRPFGPLPY 158 DG T ++ QRA+A P G LR + + + TLV+ P LP Sbjct: 98 QDGKPFTADDVIFSYQRARAVPGSVATFAGYLRTVESVTAK-DPLTLVIKTNIPNPDLPL 156 Query: 159 LL--THYTTQILAPASFDAQGNV-VAINGSGPFRIRSIALPQQFEVERVAGSDVGK-VVQ 214 L H ++ + S N A+ G+GP++ S + ++R GK + + Sbjct: 157 NLASVHIVSKHIGEKSTTENYNSGAAVIGTGPYKFVSYTPGDRVVMQRNDDYWNGKPLWE 216 Query: 215 RARYISVSRAETRTLLVQSGQADLAFSLDPPSIRALQDSPRASLLSAMLPRTTLLK---- 270 + Y ++ RT + SG D+ + + L+ SP + R L++ Sbjct: 217 KVNYRYINNGAARTAALLSGDVDVIDKVSVSDLAKLKQSPNVKVYPYNGLRVLLIQPSFH 276 Query: 271 --------LNAGHPL----LADVRVRRAISLCIEREGIARALLRDPDLGATQLFPPSLAR 318 N G L L DVRVRRA+SL I R+ + +L+ A Q P Sbjct: 277 QGPSPFITDNNGKQLDKNPLLDVRVRRAMSLAINRKALIDRILQGAATEANQWMPADTFG 336 Query: 319 WHDAALAPLRTNLQQACSLLDQAGWRPGSDGVRRRDGQRMALNLTTFVDR-PELPLIATA 377 ++ + + + QA LL AG+ DG ++ +++ DR P+ P A Sbjct: 337 -YNPEIKNIPFDAAQAKKLLADAGF---------PDGFKLTIHVPN--DRYPQAPETMQA 384 Query: 378 LQEEMRQIGMAVRVVIGNSSDIP---AGHRSGQLQMALAARNYGN----LPDPVASLLQD 430 + + +IG+ +V + +P R+ + + A++ +GN + ++L Sbjct: 385 VAQFWTRIGIKTQVEV-----LPWAAYSSRANKNEFAVSVLAWGNGTGEASYALVNVLGS 439 Query: 431 FGPQGGDWGAMGWDNQEVPALLARLAATPAD-AAAKGNAERARIVALLQEQLPVIPVVWY 489 P+ G GA W++ PA+ LA + A+ AAK A + E++ VIP+ Y Sbjct: 440 VDPKKG-IGASNWNHYSSPAVDKALADSTAEFDAAKREAILRGAAKTVSEEVGVIPLYHY 498 Query: 490 RQTCAVSRRVR 500 + A + ++ Sbjct: 499 QNIWAAKKGLK 509 >gi|300311169|ref|YP_003775261.1| dipeptide ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 523 Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 67/338 (19%), Positives = 140/338 (41%), Gaps = 33/338 (9%) Query: 69 LLEVDDAGQLQPSLASAWSVSADGLQWRFVLRSGLRYHDGSALTPASILACLQRAQARPG 128 L D +L P LA + VS DGL++ L+ G+++ DG+ ++ A R Sbjct: 70 LFGFDKDMKLIPVLAEGYLVSKDGLEYTIRLKQGVKFQDGTVFKADAVKAVFDRVTNPDN 129 Query: 129 VLRLAD----IAALRV-EGQTLVVVLRRPFGPLPYLLTHYTTQILAPASFDAQGNV-VAI 182 L+ + IA + T+ VVL+ PF +L H + +++P + GN +A Sbjct: 130 KLKRYNLFNRIAKTEILNDYTVKVVLKEPFSAFINVLAHPSAVMISPTALKQYGNKDIAF 189 Query: 183 N--GSGPFRIRSIALPQQFEVERVAGS------DVGKVVQRARYISVSRAETRTLLVQSG 234 + G+GPF+ +V + G V +++ + V R+ ++Q+G Sbjct: 190 HPVGTGPFKFVEWKQTDYVKVAKFDGYWKPGYPKVDEIIWK----PVVDNNARSAMMQTG 245 Query: 235 QADLAFSLDPPSIRALQDSPRASLLSAMLPRTTLLKLNAGHPLLADVRVRRAISLCIERE 294 +A + L L+ +++A + +N + +VR AI+ I ++ Sbjct: 246 EAQFTYPLPYEQADLLKSKSNLDVVAAPSIIQRYMSMNTKQKPFDNPKVREAINYAINKQ 305 Query: 295 GIARALLRDPDLGATQLFPPSLARWHDAALAPLRTNLQQACSLLDQAGWRPGSDG-VRRR 353 + + + + P + + P ++++A +LL +AG+ G + + Sbjct: 306 ALVKVAFNGYAVPMDGVVPQGVD--YAYKTGPWPYDVKKAKALLAEAGYPNGFETELWSA 363 Query: 354 DGQRMALNLTTFVDRPELPLIATALQEEMRQIGMAVRV 391 A+ + F LQ+++ Q+G+ ++ Sbjct: 364 YTHSTAVKIVQF------------LQQQLAQVGIKAKI 389 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.135 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,583,194 Number of extensions: 66276 Number of successful extensions: 214 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 212 Number of HSP's successfully gapped: 3 Length of query: 519 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 430 Effective length of database: 1,198,455 Effective search space: 515335650 Effective search space used: 515335650 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)