BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0068.p
         (328 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310858|ref|YP_003774950.1| magnesium and cobalt transport ...   680   0.0  
gi|300312916|ref|YP_003777008.1| hypothetical protein Hsero_3622...    57   2e-09

>gi|300310858|ref|YP_003774950.1| magnesium and cobalt transport
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 328

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/328 (100%), Positives = 328/328 (100%)

Query: 1   MIDPEMIVNCTVYKKGRKLREISLDEISDVLEEEGTFVWLGLLEPNVELMNKIKEEFCLH 60
           MIDPEMIVNCTVYKKGRKLREISLDEISDVLEEEGTFVWLGLLEPNVELMNKIKEEFCLH
Sbjct: 1   MIDPEMIVNCTVYKKGRKLREISLDEISDVLEEEGTFVWLGLLEPNVELMNKIKEEFCLH 60

Query: 61  ELAVEDAYAAHQRPKIEEYGDTLFVVLHTAQLTGGEVQFGETHILTGPRFVVTVRHGASR 120
           ELAVEDAYAAHQRPKIEEYGDTLFVVLHTAQLTGGEVQFGETHILTGPRFVVTVRHGASR
Sbjct: 61  ELAVEDAYAAHQRPKIEEYGDTLFVVLHTAQLTGGEVQFGETHILTGPRFVVTVRHGASR 120

Query: 121 SYAKVREHCEMLPERLVRGPSFVLYSIMDFVVDNYRPIMDDLEAKFSQYEEQLFNPGTIS 180
           SYAKVREHCEMLPERLVRGPSFVLYSIMDFVVDNYRPIMDDLEAKFSQYEEQLFNPGTIS
Sbjct: 121 SYAKVREHCEMLPERLVRGPSFVLYSIMDFVVDNYRPIMDDLEAKFSQYEEQLFNPGTIS 180

Query: 181 GKAYLQELYQLKRQLIRLRSAASPLLDVCTQLLRFHEGLITKDGKAYFRDIYDHVVRFID 240
           GKAYLQELYQLKRQLIRLRSAASPLLDVCTQLLRFHEGLITKDGKAYFRDIYDHVVRFID
Sbjct: 181 GKAYLQELYQLKRQLIRLRSAASPLLDVCTQLLRFHEGLITKDGKAYFRDIYDHVVRFID 240

Query: 241 TGDRLREMVESAVQINLAQVTIHQNEIVQTLAGWGAILAIPTMIFSLYGMNFAHMPGLSW 300
           TGDRLREMVESAVQINLAQVTIHQNEIVQTLAGWGAILAIPTMIFSLYGMNFAHMPGLSW
Sbjct: 241 TGDRLREMVESAVQINLAQVTIHQNEIVQTLAGWGAILAIPTMIFSLYGMNFAHMPGLSW 300

Query: 301 EWSFPLVLGGIVSACTLLWRRLRKAGWL 328
           EWSFPLVLGGIVSACTLLWRRLRKAGWL
Sbjct: 301 EWSFPLVLGGIVSACTLLWRRLRKAGWL 328


>gi|300312916|ref|YP_003777008.1| hypothetical protein Hsero_3622
           [Herbaspirillum seropedicae SmR1]
          Length = 337

 Score = 56.6 bits (135), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/329 (18%), Positives = 136/329 (41%), Gaps = 13/329 (3%)

Query: 1   MIDPEMIVNCTVYKKGRKLREISLDEISDVLEEEGTFVWLGLLEPNVELMNKIKEEFCLH 60
           + +P   +    +++GR  R+++ +++ D    E  F WL +   +V++ + ++    + 
Sbjct: 14  LYEPAGFICAFRFEEGRA-RQMNWNDLVDYRPVEPAFTWLHVKTADVKIQHWMQHHSGIP 72

Query: 61  ELAVEDAYAAHQRPKIEEYGDTLFVVLHTAQLTGGEV--QFGETHILTGPRFVVTVRHGA 118
           +   E   ++   P +    D ++  L   ++  G+   + G  H       ++T+R   
Sbjct: 73  DYITEFLLSSDTHPGLHATPDGVYGTLTDMKMEIGDTGTEKGALHFYLDRTRLLTLRTQP 132

Query: 119 SRSYAKVREHCEMLPERLVRGPSFVLYSIMDFVVDNYRPIMDDLEAKFSQYEEQLFNPGT 178
             S   +R+  ++L       P  +   ++  + D +   +D L  K    E  + +   
Sbjct: 133 LLSTNMLRQ--KVLDGGDFDNPMDLFAELLRCLADGFNARLDKLNDKVDDIEFSVLSDRR 190

Query: 179 ISGKAYLQELYQLKRQLIRLRSAASPLLDVCTQLLRFHEGLITKDGKAYFRDIYDHVVRF 238
              ++   EL  ++RQL  LR   +P   +  Q  R     +            D +   
Sbjct: 191 AEDRS---ELSGIRRQLAELRRYIAPERRILAQFHRLRPSWVPLAALEDLTHALDELNEL 247

Query: 239 IDTGDRLREMVESAVQINLAQVTIHQNEIVQTLAGWGAILAIPTMIFSLYGMNFAHMPGL 298
             T + + E  +   +   +Q++   N  +  L+   A+L   T++  ++GMN A +PGL
Sbjct: 248 HSTVEAVYERAKLLQEEIASQMSEQMNRNLMALSILTALLMPATLVSGIFGMNVAGLPGL 307

Query: 299 SWEWSFPLVLG-----GIVSACTLLWRRL 322
             E SF +V+G     G+ +   L W ++
Sbjct: 308 HDEASFWIVMGVMGGLGVATVAFLKWMKI 336


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.140    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,046,182
Number of extensions: 43164
Number of successful extensions: 116
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 2
Length of query: 328
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 242
Effective length of database: 1,212,660
Effective search space: 293463720
Effective search space used: 293463720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 131 (55.1 bits)