BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0067.p
         (298 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310857|ref|YP_003774949.1| drug/metabolite transporter (DM...   579   e-167
gi|300314029|ref|YP_003778121.1| permease [Herbaspirillum serope...    57   2e-09

>gi|300310857|ref|YP_003774949.1| drug/metabolite transporter (DMT)
           superfamily permease [Herbaspirillum seropedicae SmR1]
          Length = 298

 Score =  579 bits (1493), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 298/298 (100%), Positives = 298/298 (100%)

Query: 1   MHYKHLWFPLGAVLIWAGNTVISKMSASVIAPEDISFYRWVLAALLMSPFLARQTWAARA 60
           MHYKHLWFPLGAVLIWAGNTVISKMSASVIAPEDISFYRWVLAALLMSPFLARQTWAARA
Sbjct: 1   MHYKHLWFPLGAVLIWAGNTVISKMSASVIAPEDISFYRWVLAALLMSPFLARQTWAARA 60

Query: 61  QIRPHLGKIVVLALLGMVLFQSLAYFAAATASATSMGIIASLMPLLTLVLSIKLLSEPPT 120
           QIRPHLGKIVVLALLGMVLFQSLAYFAAATASATSMGIIASLMPLLTLVLSIKLLSEPPT
Sbjct: 61  QIRPHLGKIVVLALLGMVLFQSLAYFAAATASATSMGIIASLMPLLTLVLSIKLLSEPPT 120

Query: 121 VGTLGGGILSLLGLAVLIGRGHPLALFEQGVVTGDLLMLLATIAYGLYGVMLRRWALPLR 180
           VGTLGGGILSLLGLAVLIGRGHPLALFEQGVVTGDLLMLLATIAYGLYGVMLRRWALPLR
Sbjct: 121 VGTLGGGILSLLGLAVLIGRGHPLALFEQGVVTGDLLMLLATIAYGLYGVMLRRWALPLR 180

Query: 181 TWQLLYMQVLMAVVLLFPGFVLGHHSPVTRENLPILLYAGIAASIISQFLWMRGVAYLGA 240
           TWQLLYMQVLMAVVLLFPGFVLGHHSPVTRENLPILLYAGIAASIISQFLWMRGVAYLGA
Sbjct: 181 TWQLLYMQVLMAVVLLFPGFVLGHHSPVTRENLPILLYAGIAASIISQFLWMRGVAYLGA 240

Query: 241 SRCAIFVNLMPVFTVIIAVLALGEQLHGYHAVGGVITLGGVIMAQVFRQRLRWRRLPG 298
           SRCAIFVNLMPVFTVIIAVLALGEQLHGYHAVGGVITLGGVIMAQVFRQRLRWRRLPG
Sbjct: 241 SRCAIFVNLMPVFTVIIAVLALGEQLHGYHAVGGVITLGGVIMAQVFRQRLRWRRLPG 298


>gi|300314029|ref|YP_003778121.1| permease [Herbaspirillum
           seropedicae SmR1]
          Length = 310

 Score = 57.0 bits (136), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 103/226 (45%), Gaps = 16/226 (7%)

Query: 73  ALLGMVLFQSLAYFAAATASATSMGIIASLMPLLTLVLSIKLLSEPPT--------VGTL 124
           + LG  LF        +  +A S G+I S +P +  V+S   L E  +         G +
Sbjct: 77  SFLGNFLFTLCMITGVSMTNAVSAGVIMSAIPAVVAVMSWIFLKEKISLRVWGAVACGAV 136

Query: 125 GGGILSLLGLAVLIGRGHPLALFEQGVVTGDLLMLLATIAYGLYGVMLRRWALPLRTWQL 184
           G G+LSL       G G   A   Q    G+ L+  A +    Y V+ ++    L   ++
Sbjct: 137 GIGLLSL----AKDGHGASAASGGQYAWLGNGLVFCAVLCEAAYAVIGKKLTAVLTPKRI 192

Query: 185 LYMQVLMAVVLLFP-GFVLGHH---SPVTRENLPILLYAGIAASIISQFLWMRGVAYLGA 240
             +  L  ++L+ P G     H     V      +LL+ G+AAS+ + +LWM G+  + A
Sbjct: 193 SAVINLWGLLLMTPMGVYTALHFDFGAVPANMWWLLLFYGLAASVWTVWLWMTGLKVVPA 252

Query: 241 SRCAIFVNLMPVFTVIIAVLALGEQLHGYHAVGGVITLGGVIMAQV 286
           +R  +F  ++PV   ++ VLALGE L    A    I L G+++A +
Sbjct: 253 ARAGVFTVMLPVSAALVGVLALGESLSALQAGAFAIALAGMLLATL 298


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.143    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 840,140
Number of extensions: 31785
Number of successful extensions: 186
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 5
Length of query: 298
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 213
Effective length of database: 1,217,395
Effective search space: 259305135
Effective search space used: 259305135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 130 (54.7 bits)