BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0063.p (1192 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310853|ref|YP_003774945.1| cation/multidrug efflux pump pr... 2070 0.0 gi|300310852|ref|YP_003774944.1| cation/multidrug efflux pump tr... 1075 0.0 gi|300311798|ref|YP_003775890.1| cation/multidrug efflux pump pr... 998 0.0 gi|300310690|ref|YP_003774782.1| cation/multidrug efflux pump pr... 406 e-114 gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump pr... 391 e-109 >gi|300310853|ref|YP_003774945.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1078 Score = 2070 bits (5362), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1033/1074 (96%), Positives = 1054/1074 (98%), Gaps = 8/1074 (0%) Query: 1 MNISLPFIQRPIATTLLTIGIALAGIVAFRLLPVSPLPQVDYPTISISASMPGASPETMA 60 MNISLPFIQRPIATTLLTIGIALAGIVAFRLLPVSPLPQVDYPTISISASMPGASPETMA Sbjct: 1 MNISLPFIQRPIATTLLTIGIALAGIVAFRLLPVSPLPQVDYPTISISASMPGASPETMA 60 Query: 61 ATVATPLERAMGAIAGVTEMTSTSSQNSTRITLQFDLSRDIDGAARDVQAALNAARNLLP 120 ATVATPLERAMGAIAGVTEMTSTSSQNSTRITLQFDLSRDIDGAARDVQAALNAARNLLP Sbjct: 61 ATVATPLERAMGAIAGVTEMTSTSSQNSTRITLQFDLSRDIDGAARDVQAALNAARNLLP 120 Query: 121 TGMPSNPTYRKVNPADAPILILAMTSDTMTQGQMYDAADSIVAQKLSQVRGVGQVSVGGS 180 TGMPSNPTYRKVNPADAPILILAMTSDTMTQGQMYDAADSIVAQKLSQVRGVGQVSVGGS Sbjct: 121 TGMPSNPTYRKVNPADAPILILAMTSDTMTQGQMYDAADSIVAQKLSQVRGVGQVSVGGS 180 Query: 181 SQPAVRIELNPTALNKYGIGTADVRTAVAATNANRPKGLLEDQDRNWQIYANDQAKTAAE 240 SQPAVRIELNPTALNKYGIGTADVRTAVAATNANRPKGLLEDQDRNWQIYANDQAKTAAE Sbjct: 181 SQPAVRIELNPTALNKYGIGTADVRTAVAATNANRPKGLLEDQDRNWQIYANDQAKTAAE 240 Query: 241 YAPLIVSYRNGTPVRVQDVAEVRDSVADVRNAGSSNGKPSVLIIINRQPGANIIDTVDNV 300 YAPLIVSYRNGTPVRVQDVAEVRDSVADVRNAGSSNGKPSVLIIINRQPGANIIDTVDNV Sbjct: 241 YAPLIVSYRNGTPVRVQDVAEVRDSVADVRNAGSSNGKPSVLIIINRQPGANIIDTVDNV 300 Query: 301 RELLPQLQASIPSAIDMKVVLDRTPTIRASLKETEFTLILSVALVIMVVFLFLRNARATL 360 RELLPQLQASIPSAIDMKVVLDRTPTIRASLKETEFTLILSVALVIMVVFLFLRNARATL Sbjct: 301 RELLPQLQASIPSAIDMKVVLDRTPTIRASLKETEFTLILSVALVIMVVFLFLRNARATL 360 Query: 361 IPAVAVPVSLIGTFGVMYLAGFSLDNLSLMALTIATGFVVDDAIVVLENISRHIESGMKP 420 IPAVAVPVSLIGTFGVMYLAGFSLDNLSLMALTIATGFVVDDAIVVLENISRHIESGMKP Sbjct: 361 IPAVAVPVSLIGTFGVMYLAGFSLDNLSLMALTIATGFVVDDAIVVLENISRHIESGMKP 420 Query: 421 YKAALLGAREVGFTVLSMSISLIAVFIPILMMEGIVGRLFREFAITLSVAILVSLVVSLT 480 YKAALLGAREVGFTVLSMSISLIAVFIPILMMEGIVGRLFREFAITLSVAILVSLVVSLT Sbjct: 421 YKAALLGAREVGFTVLSMSISLIAVFIPILMMEGIVGRLFREFAITLSVAILVSLVVSLT 480 Query: 481 TTPMMCAQLLRHDPAADAARRQRRHPWLQKIADQSAAIFEDMLLAYQRTLAWALRAAPLM 540 TTPMMCAQLLRHDPAAD ARRQRRHPWLQKIADQSAAIFEDMLLAYQRTLAWALRAAPLM Sbjct: 481 TTPMMCAQLLRHDPAADEARRQRRHPWLQKIADQSAAIFEDMLLAYQRTLAWALRAAPLM 540 Query: 541 MLILLATIALNVYLYKAIPKGFFPQQDTGRLVGGIRGDQAISFQAMRTKLNEFIDIVRAD 600 MLILLATIALNVYLYKAIPKGFFPQQDTGRLVGGIRGDQAISFQAMRTKLNEFIDIVRAD Sbjct: 541 MLILLATIALNVYLYKAIPKGFFPQQDTGRLVGGIRGDQAISFQAMRTKLNEFIDIVRAD 600 Query: 601 PAVSDVVAFTGGQRRNGGFMYVTLKPLSERKDSADKVVARLRIKTAKVAGARVFLVPVQD 660 PAVSDVVAFTGGQRRNGGFMYVTLKPLSERKDSADKVVARLRIKTAKVAGARVFLVPVQD Sbjct: 601 PAVSDVVAFTGGQRRNGGFMYVTLKPLSERKDSADKVVARLRIKTAKVAGARVFLVPVQD 660 Query: 661 IRIGARQSDSQYEYSLKSDDVGLLRIWEPKIRLALSNLKELEDISTDQQDNGLQTTLTID 720 IRIGARQSDSQYEYSLKSDDVGLLRIWEPKIRLALSNLKELEDISTDQQDNGLQTTLTID Sbjct: 661 IRIGARQSDSQYEYSLKSDDVGLLRIWEPKIRLALSNLKELEDISTDQQDNGLQTTLTID 720 Query: 721 RESAMRAGVTPQLIDSTLSDLFGQRQISTIYSGMNQYHVVMEAAPQYWQSPETLRDTYVS 780 RE+AMRAGVTPQLIDSTLSDLFGQRQISTIYSGMNQYHVVMEAAPQYWQSPETLRDTYVS Sbjct: 721 RETAMRAGVTPQLIDSTLSDLFGQRQISTIYSGMNQYHVVMEAAPQYWQSPETLRDTYVS 780 Query: 781 LAGSSNLSPTTSSLSTPPALSASGKLNANTGLAQTISTAPSRQIPLAAFSRFEPTTTSLS 840 LAGSSNLSPTTSSLSTPPALSASGKLNANTGLAQTISTAPSRQIPLAAFSRFEPTTTSLS Sbjct: 781 LAGSSNLSPTTSSLSTPPALSASGKLNANTGLAQTISTAPSRQIPLAAFSRFEPTTTSLS 840 Query: 841 VSHEGQFVASTLSFNLAEGVSLSQATAAIDRAMAQLGVPTNVLGTFAGTANAFQSSTSSQ 900 VSHEGQFVASTLSFNLAEGVSLSQATAAIDRAMAQLGVPTNVLGTFAGTANAFQSSTSSQ Sbjct: 841 VSHEGQFVASTLSFNLAEGVSLSQATAAIDRAMAQLGVPTNVLGTFAGTANAFQSSTSSQ 900 Query: 901 PLLILTALLAVYIVLGILYESLIHPITIISTLPSAGVGALLALMVTGTDFSLIALIGVIL 960 PLLILTALLAVYIVLGILYESLIHPITIISTLPSAGVGALLALMVTGTDFSLIALIGVIL Sbjct: 901 PLLILTALLAVYIVLGILYESLIHPITIISTLPSAGVGALLALMVTGTDFSLIALIGVIL 960 Query: 961 LIGIVKKNAIMMIDFALEAERHEGKSPREAIYQACLLRFRPILMTTMAALLGALPLMLGT 1020 LIGIVKKNAIMM+DFA++AER+ G SPR+AI++AC LRFRPI+MTTMAALLGA+PL +G Sbjct: 961 LIGIVKKNAIMMVDFAIDAERNRGMSPRDAIFEACKLRFRPIMMTTMAALLGAIPLAIGH 1020 Query: 1021 GVGSELRQPLGITMVGGLLVSQVLTLFTTPVIYLGFDSL--------GRRLRAE 1066 G G+ELRQPLGI++VGGL+VSQ+LTL+TTPV+YL + L GR+ + E Sbjct: 1021 GDGAELRQPLGISIVGGLVVSQLLTLYTTPVVYLYMERLSSWSKRRFGRKNKTE 1074 Score = 240 bits (613), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 113/113 (100%), Positives = 113/113 (100%) Query: 1080 KKNAIMMVDFAIDAERNRGMSPRDAIFEACKLRFRPIMMTTMAALLGAIPLAIGHGDGAE 1139 KKNAIMMVDFAIDAERNRGMSPRDAIFEACKLRFRPIMMTTMAALLGAIPLAIGHGDGAE Sbjct: 966 KKNAIMMVDFAIDAERNRGMSPRDAIFEACKLRFRPIMMTTMAALLGAIPLAIGHGDGAE 1025 Query: 1140 LRQPLGISIVGGLVVSQLLTLYTTPVVYLYMERLSSWSKRRFGRKNKTETSAA 1192 LRQPLGISIVGGLVVSQLLTLYTTPVVYLYMERLSSWSKRRFGRKNKTETSAA Sbjct: 1026 LRQPLGISIVGGLVVSQLLTLYTTPVVYLYMERLSSWSKRRFGRKNKTETSAA 1078 >gi|300310852|ref|YP_003774944.1| cation/multidrug efflux pump transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1048 Score = 1075 bits (2780), Expect = 0.0, Method: Compositional matrix adjust. Identities = 573/1070 (53%), Positives = 742/1070 (69%), Gaps = 52/1070 (4%) Query: 1 MNISLPFIQRPIATTLLTIGIALAGIVAFRLLPVSPLPQVDYPTISISASMPGASPETMA 60 MN S FI RP+AT+LL + I L GIVA+RLLP+S LP+VDYPTI + PGASP+ M Sbjct: 1 MNPSRQFILRPVATSLLMLAILLVGIVAYRLLPLSALPEVDYPTIQVVTLYPGASPDVMT 60 Query: 61 ATVATPLERAMGAIAGVTEMTSTSSQNSTRITLQFDLSRDIDGAARDVQAALNAARNLLP 120 ++V PLER G + G+ +M+STSS ++ ITLQF+L +D A ++VQAA+NA NLLP Sbjct: 61 SSVTAPLERQFGQMPGLKQMSSTSSGGASVITLQFNLDLSLDIAEQEVQAAINAGSNLLP 120 Query: 121 TGMPSNPTYRKVNPADAPILILAMTSDTMTQGQMYDAADSIVAQKLSQVRGVGQVSVGGS 180 + +P P Y KVNPAD PI+ LA+TS+TM ++ D D+ +AQK+SQ+ GVG VS+ G Sbjct: 121 SDLPMPPVYSKVNPADTPIITLAVTSNTMPLPKVQDLIDTRIAQKISQLSGVGLVSLSGG 180 Query: 181 SQPAVRIELNPTALNKYGIGTADVRTAVAATNANRPKGLLEDQDRNWQIYANDQAKTAAE 240 +PAVR++LNP A+ G+ DVRTA+ N N+ KG + R I ANDQ ++A E Sbjct: 181 QRPAVRMQLNPRAVAALGLNLDDVRTAIGNANVNQAKGSFDGPTRASTIDANDQLRSADE 240 Query: 241 YAPLIVSYRNGTPVRVQDVAEVRDSVADVRNAGSSNGKPSVLIIINRQPGANIIDTVDNV 300 Y LI++Y+NG P+RV DVA+V D +VR +N +P+V++ I RQPGAN+I VD++ Sbjct: 241 YRNLIIAYKNGAPIRVSDVADVVDGAENVRLGAWANTQPAVIVNIQRQPGANVIAVVDSI 300 Query: 301 RELLPQLQASIPSAIDMKVVLDRTPTIRASLKETEFTLILSVALVIMVVFLFLRNARATL 360 +++LPQLQAS+P AID+ ++ DRT TIRAS+ + +F L+LSVALV+MV+F+FLRN AT+ Sbjct: 301 KKILPQLQASLPGAIDVHILTDRTTTIRASVDDVKFELLLSVALVVMVIFVFLRNVPATI 360 Query: 361 IPAVAVPVSLIGTFGVMYLAGFSLDNLSLMALTIATGFVVDDAIVVLENISRHIESGMKP 420 IP+VAVP+SL+GTF +MYLAGFS++NL+LMALTIATGFVVDDAIV++ENISR+IE GMKP Sbjct: 361 IPSVAVPLSLVGTFAIMYLAGFSINNLTLMALTIATGFVVDDAIVMIENISRYIEEGMKP 420 Query: 421 YKAALLGAREVGFTVLSMSISLIAVFIPILMMEGIVGRLFREFAITLSVAILVSLVVSLT 480 +AAL GA ++GFT++S++ SLIAV IP+L M +VGRLF EFA+TL+V+IL+S VVSLT Sbjct: 421 MQAALKGAEQIGFTIISLTFSLIAVLIPLLFMGDVVGRLFHEFAVTLAVSILISAVVSLT 480 Query: 481 TTPMMCAQLLRHDPAADAARRQRRHPWLQKIADQSAAIFEDMLLAYQRTLAWALRAAPLM 540 TPMMCA+LLRH P + + W + Q F+ ++ Y L W L L Sbjct: 481 LTPMMCARLLRHQP-------EEQQGWFYHKSQQ---FFDRIIARYGVMLQWVLARQKLT 530 Query: 541 MLILLATIALNVYLYKAIPKGFFPQQDTGRLVGGIRGDQAISFQAMRTKLNEFIDIVRAD 600 +L+ AT+ L V LY +PKGFFP QDTG + G Q+ISF AM K + +V D Sbjct: 531 LLVAAATLGLTVLLYVFVPKGFFPLQDTGVIQGISEATQSISFSAMGEKQQQLAKVVLQD 590 Query: 601 PAVSDVVAFTG----GQRRNGGFMYVTLKPLSERKDSADKVVARLRIK-TAKVAGARVFL 655 PAV + +F G N G M + LKP R+ SA V+ RL+ K A+V G +++ Sbjct: 591 PAVESLTSFIGVDGTNATLNSGRMLINLKPHDVREVSATDVIRRLQGKLAAEVPGITLYM 650 Query: 656 VPVQDIRIGARQSDSQYEYSLKSDDVGLLRIWEPKIRLALSNLKELEDISTDQQDNGLQT 715 PVQD+ I S +QY+++L+ D +L W PK+ L EL D++T+ QD GLQ Sbjct: 651 QPVQDLTIEDSVSRTQYQFTLEDADPAVLSTWVPKLIARLQQQSELADVATNLQDQGLQA 710 Query: 716 TLTIDRESAMRAGVTPQLIDSTLSDLFGQRQISTIYSGMNQYHVVMEAAPQYWQSPETLR 775 + IDR +A R G+T ID+ L + FGQR ISTIY+ NQY VVME P++ P L Sbjct: 711 YIEIDRNAASRLGITTAAIDNALYNAFGQRLISTIYTQSNQYRVVMEVKPEFQHGPAALD 770 Query: 776 DTYVSLAGSSNLSPTTSSLSTPPALSASGKLNANTGLAQTISTAPSRQIPLAAFSRFEPT 835 Y+ +G ++PL++ + Sbjct: 771 SIYLVTSGGG-------------------------------------KVPLSSIATVTER 793 Query: 836 TTSLSVSHEGQFVASTLSFNLAEGVSLSQATAAIDRAMAQLGVPTNVLGTFAGTANAFQS 895 T L V+H GQF A+T+SFNLA+G SL +A AI A ++G+P + + F G A AFQ+ Sbjct: 794 TAPLVVNHIGQFPAATVSFNLAKGASLGEAVKAIKAAEEEIGMPASTVTNFQGAALAFQA 853 Query: 896 STSSQPLLILTALLAVYIVLGILYESLIHPITIISTLPSAGVGALLALMVTGTDFSLIAL 955 S S+ LIL A++ +YIVLG+LYES IHPITI+STLPSAGVGALL+LM++GTD +I + Sbjct: 854 SLSNTLWLILAAIVTMYIVLGVLYESYIHPITILSTLPSAGVGALLSLMISGTDLGIIGI 913 Query: 956 IGVILLIGIVKKNAIMMIDFALEAERHEGKSPREAIYQACLLRFRPILMTTMAALLGALP 1015 IG+ILLIGIVKKNAIMMIDFALEAERHEGKSPREAIYQACLLRFRPILMTTMAALLGALP Sbjct: 914 IGIILLIGIVKKNAIMMIDFALEAERHEGKSPREAIYQACLLRFRPILMTTMAALLGALP 973 Query: 1016 LMLGTGVGSELRQPLGITMVGGLLVSQVLTLFTTPVIYLGFDSLGRRLRA 1065 LMLGTGVGSELRQPLGITMVGGLLVSQVLTLFTTPVIYLGFDSLGRRLRA Sbjct: 974 LMLGTGVGSELRQPLGITMVGGLLVSQVLTLFTTPVIYLGFDSLGRRLRA 1023 Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 70/105 (66%), Positives = 91/105 (86%) Query: 1080 KKNAIMMVDFAIDAERNRGMSPRDAIFEACKLRFRPIMMTTMAALLGAIPLAIGHGDGAE 1139 KKNAIMM+DFA++AER+ G SPR+AI++AC LRFRPI+MTTMAALLGA+PL +G G G+E Sbjct: 924 KKNAIMMIDFALEAERHEGKSPREAIYQACLLRFRPILMTTMAALLGALPLMLGTGVGSE 983 Query: 1140 LRQPLGISIVGGLVVSQLLTLYTTPVVYLYMERLSSWSKRRFGRK 1184 LRQPLGI++VGGL+VSQ+LTL+TTPV+YL + L + RFG++ Sbjct: 984 LRQPLGITMVGGLLVSQVLTLFTTPVIYLGFDSLGRRLRARFGQR 1028 >gi|300311798|ref|YP_003775890.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1051 Score = 998 bits (2580), Expect = 0.0, Method: Compositional matrix adjust. Identities = 520/1075 (48%), Positives = 730/1075 (67%), Gaps = 68/1075 (6%) Query: 1 MNISLPFIQRPIATTLLTIGIALAGIVAFRLLPVSPLPQVDYPTISISASMPGASPETMA 60 M++S FI+RPI TTLL I I L G+ + LLPV+PLPQVD+PTI ++A +PG SPETMA Sbjct: 1 MSVSAAFIKRPIGTTLLAIAILLVGVAVWPLLPVAPLPQVDFPTIQVTAQLPGGSPETMA 60 Query: 61 ATVATPLERAMGAIAGVTEMTSTSSQNSTRITLQFDLSRDIDGAARDVQAALNAARNLLP 120 + VA PLER IAG+++MTS S+ ST+ITLQFDL+R+ID AA DVQAA+NA+ LP Sbjct: 61 SNVAQPLERQFSLIAGLSQMTSQSTLGSTQITLQFDLNRNIDAAALDVQAAINASTGQLP 120 Query: 121 TGMPSNPTYRKVNPADAPILILAMTSDTMTQGQMYDAADSIVAQKLSQVRGVGQVSVGGS 180 +P+ PT+RK+NPAD+PI+I+++ S+ + + D AD+I+AQ++SQ+ GVG V+V G Sbjct: 121 ANLPNPPTFRKINPADSPIMIMSVQSEALPLTVVNDYADNILAQQISQISGVGLVNVNGQ 180 Query: 181 SQPAVRIELNPTALNKYGIGTADVRTAVAATNANRPKGLLEDQDRNWQIYANDQAKTAAE 240 +PAVRI+++P L G+ D+R +A T N+PKG ++ + + +Y NDQ A + Sbjct: 181 QKPAVRIQVDPAKLATLGLSLEDIRGVIATTTVNQPKGTVDGARQAFTVYTNDQLLKAEQ 240 Query: 241 YAPLIVSYRNGTPVRVQDVAEVRDS-------------VADVRNAGSSNGKPSVLIIINR 287 + +++++RNG P+RV+D+ D A+ + +NG+ S+++ I + Sbjct: 241 WNDMVLAWRNGAPIRVKDIGIAVDGPENNKIAAWAFAGAANTADHSITNGR-SIVLAITK 299 Query: 288 QPGANIIDTVDNVRELLPQLQASIPSAIDMKVVLDRTPTIRASLKETEFTLILSVALVIM 347 QPGAN+I+TV ++ +P+L+A+IP+AI + ++DRT TIRAS+++ EFTL+L++ALV+M Sbjct: 300 QPGANVIETVGRIKAAMPRLRAAIPAAIHVNTLIDRTQTIRASVEDVEFTLVLTIALVVM 359 Query: 348 VVFLFLRNARATLIPAVAVPVSLIGTFGVMYLAGFSLDNLSLMALTIATGFVVDDAIVVL 407 V+F+FLRN ATLIP+V VP++++GT GVMY+ G+SLDNLSLMALTIA GFVVDDAIV+L Sbjct: 360 VIFVFLRNVAATLIPSVTVPLAIMGTAGVMYVVGYSLDNLSLMALTIAVGFVVDDAIVML 419 Query: 408 ENISRHIESGMKPYKAALLGAREVGFTVLSMSISLIAVFIPILMMEGIVGRLFREFAITL 467 ENI R++E GM P +AAL GA E+GFT++S+S+SL+AVFIP+L+M GIVGRLFREFA+T+ Sbjct: 420 ENIYRYVEEGMTPLEAALKGAGEIGFTIISISVSLVAVFIPLLLMGGIVGRLFREFAVTV 479 Query: 468 SVAILVSLVVSLTTTPMMCAQLLRHDPAADAARRQRRHPWLQKIADQSAAIFEDMLLAYQ 527 ++ I VS+++SLT TPM+C++ L+++ R + + W ++ F+ ML Y+ Sbjct: 480 TLTIAVSVIISLTLTPMLCSRFLKNE---HGQRHGKLYQWFERC-------FDAMLAGYK 529 Query: 528 RTLAWALRAAPLMMLILLATIALNVYLYKAIPKGFFPQQDTGRLVGGIRGDQAISFQAMR 587 R L ++ + ++ +AT+AL L+ IPKGFFPQQD G +VG Q S AM Sbjct: 530 RGLDVVMKHQFITLMSFIATLALTAVLFIFIPKGFFPQQDNGVIVGFAESAQDTSSAAMH 589 Query: 588 TKLNEFIDIVRADPAVSDVVAFT---GGQRRNGGFMYVTLKPLSE-RKDSADKVVARLRI 643 +L + ++VR DP DV+ F G N G ++ LKP + R +AD+++ARLR Sbjct: 590 ERLLKVAEVVRQDP---DVIGFAMSAGSTTFNTGQFFIALKPKDQGRTTNADEIIARLRP 646 Query: 644 KTAKVAGARVFLVPVQDIRIGARQSDSQYEYSLKSDDVGLLRIWEPKIRLALSNLKELED 703 K A++ G +F+ QDI +G R S +QY+Y++ D+ L +W P++ L +L D Sbjct: 647 KVARIEGVNLFMQASQDINVGGRLSRTQYQYTITDTDLDELNVWAPRMLERFRQLPQLTD 706 Query: 704 ISTDQQDNGLQTTLTIDRESAMRAGVTPQLIDSTLSDLFGQRQISTIYSGMNQYHVVMEA 763 +++DQQ+ +TIDR A G++P LID+T+ D GQRQ++ ++ +N Y V++E Sbjct: 707 VASDQQNQAAAAVITIDRARASSFGISPSLIDATIYDAIGQRQVAQYFTQINSYRVILEV 766 Query: 764 APQYWQSPETLRDTYVSLAGSSNLSPTTSSLSTPPALSASGKLNANTGLAQTISTAPSRQ 823 P + P Y++ SP T +Q Sbjct: 767 TPALQKDPALFDKLYLT-------SPLTG-----------------------------QQ 790 Query: 824 IPLAAFSRFEPTTTS-LSVSHEGQFVASTLSFNLAEGVSLSQATAAIDRAMAQLGVPTNV 882 +PL+ F + + + TS LS+SH+ QF A T+SFNLA+GVSL +A I + Q+GVP + Sbjct: 791 VPLSTFVKIDTSKTSYLSISHQSQFPAVTISFNLAKGVSLGEAVDVIQKTKDQMGVPQTL 850 Query: 883 LGTFAGTANAFQSSTSSQPLLILTALLAVYIVLGILYESLIHPITIISTLPSAGVGALLA 942 +G F GTA AF S SSQP LI AL+AVYIVLG+LYES IHP+TI+STLPSAGVGALL Sbjct: 851 VGNFQGTAKAFGDSLSSQPYLIAAALIAVYIVLGLLYESYIHPLTILSTLPSAGVGALLI 910 Query: 943 LMVTGTDFSLIALIGVILLIGIVKKNAIMMIDFALEAERHEGKSPREAIYQACLLRFRPI 1002 LM G D S+IALIG+ILLIGIVKKN IMMIDFAL AER +G P +AIYQACLLRFRPI Sbjct: 911 LMAGGYDLSVIALIGIILLIGIVKKNGIMMIDFALTAERSQGMKPEQAIYQACLLRFRPI 970 Query: 1003 LMTTMAALLGALPLMLGTGVGSELRQPLGITMVGGLLVSQVLTLFTTPVIYLGFD 1057 +MTTM ALL LPLMLG G GSELR+PLG MVGGL++SQ LTLFTTPV+YL D Sbjct: 971 MMTTMCALLSGLPLMLGHGAGSELRRPLGYAMVGGLILSQALTLFTTPVVYLYLD 1025 Score = 151 bits (382), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 65/101 (64%), Positives = 83/101 (82%) Query: 1080 KKNAIMMVDFAIDAERNRGMSPRDAIFEACKLRFRPIMMTTMAALLGAIPLAIGHGDGAE 1139 KKN IMM+DFA+ AER++GM P AI++AC LRFRPIMMTTM ALL +PL +GHG G+E Sbjct: 934 KKNGIMMIDFALTAERSQGMKPEQAIYQACLLRFRPIMMTTMCALLSGLPLMLGHGAGSE 993 Query: 1140 LRQPLGISIVGGLVVSQLLTLYTTPVVYLYMERLSSWSKRR 1180 LR+PLG ++VGGL++SQ LTL+TTPVVYLY++R W R+ Sbjct: 994 LRRPLGYAMVGGLILSQALTLFTTPVVYLYLDRAHYWYMRK 1034 >gi|300310690|ref|YP_003774782.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1049 Score = 406 bits (1043), Expect = e-114, Method: Compositional matrix adjust. Identities = 329/1076 (30%), Positives = 548/1076 (50%), Gaps = 83/1076 (7%) Query: 7 FIQRPIATTLLTIGIALAGIVAFRLLPVSPLPQVDYPTISISASMPGASPETMAATVATP 66 FI RPI +L I + LAGIV+ LP++ P + P I+I+A+ PGAS +T+ TV Sbjct: 5 FIDRPIFAWVLAIIVMLAGIVSVLTLPIAQYPAIAPPAIAITANYPGASAKTLEDTVTQI 64 Query: 67 LERAMGAIAGVTEMTSTS-SQNSTRITLQFDLSRDIDGAARDVQAALNAARNLLPTGMPS 125 +E+ M + ++ M STS S S ITL F+ + D A VQ L+ A LLP+ + Sbjct: 65 IEQKMKGLDRLSYMASTSESSGSVTITLTFENGTNPDTAQVQVQNKLSLATPLLPSEVQQ 124 Query: 126 NPTYRKVNPADAPILILAMTSD--TMTQGQMYDAADSIVAQKLSQVRGVGQVSVGGSSQP 183 A + +LA TS+ +M+ + D + V +S+V GVG ++ GS Q Sbjct: 125 QGI-TVTKSATNFLNVLAFTSEDGSMSGSDLSDYVAANVQDAISRVEGVGDTTLFGS-QY 182 Query: 184 AVRIELNPTALNKYGIGTADVRTAVAATNANRPKGLL------EDQDRNWQIYANDQAKT 237 A+RI L+P LN YG+ DV+ A+ A NA G L E+Q N I A + +T Sbjct: 183 AMRIWLDPNKLNSYGLTPLDVKNAIQAQNAQVSSGQLGGLPAAENQQINATITAQTRLRT 242 Query: 238 AAEYAPLIV-SYRNGTPVRVQDVAEVRDSVADVRNAGSSNGKPSVLIIINRQPGANIIDT 296 A ++ +++ + G V+++DVA + + G NGKP+ + I GAN +DT Sbjct: 243 ADQFQNIVLRTLTGGAQVKLRDVARIELGSESYTSVGRYNGKPAAGLAIKLATGANALDT 302 Query: 297 VDNVRELLPQLQASIPSAIDMKVVLDRTPTIRASLKETEFTLILSVALVIMVVFLFLRNA 356 V + + + +L+ P+ + ++ D TP +R S++E TLI +V LV +V++LFL+N Sbjct: 303 VKAIDKRVAELEKFFPTGMKVQKPYDTTPFVRISIEEVVRTLIEAVVLVFLVMYLFLQNF 362 Query: 357 RATLIPAVAVPVSLIGTFGVMYLAGFSLDNLSLMALTIATGFVVDDAIVVLENISRHI-E 415 RATLIP +AVPV L+GTFGV+ + GF+++ L++ A+ +A G +VDDAIVV+EN+ R + E Sbjct: 363 RATLIPTIAVPVVLLGTFGVLAVFGFTINTLTMFAMVLAIGLLVDDAIVVVENVERVMSE 422 Query: 416 SGMKPYKAALLGAREVGFTVLSMSISLIAVFIPILMMEGIVGRLFREFAITLSVAILVSL 475 G+ P +A ++ ++ +++ L AVF+P+ G G ++R+F+IT+ A+ +S+ Sbjct: 423 EGLPPKQATRKSMGQISGALVGVALVLAAVFVPMAFFSGSTGVIYRQFSITIVSAMTLSV 482 Query: 476 VVSLTTTPMMCAQLLRHDPAADAARRQRRHPWLQKIADQSAAIFEDMLLAYQRTLAWALR 535 +V+L TP +CA LL+ A W + D+S ++ ++ + W Sbjct: 483 LVALVLTPALCATLLKPAAKGHALATTGFFGWFNRQFDRSNIRYQG-IVRHMLGRGWRYM 541 Query: 536 AAPLMMLILLATIALNVYLYKAIPKGFFPQQDTGRLVGGIR----GDQAISFQAMRTKLN 591 AA ++L AL V + +P GF P +D G L ++ +A + + +R Sbjct: 542 AAYAVLL------ALVVAGFMKLPVGFLPDEDQGTLFAIMQLPSGATKARTDEVIRQVEQ 595 Query: 592 EFIDIVRADPAVSDVVAFTG----GQRRNGGFMYVTLKPLSERKD---SADKVVARLRIK 644 F +V AVS V A +G G +N GF ++ LKP ERK S V A+ Sbjct: 596 HF--LVDQKEAVSGVFAVSGFSFAGSGQNMGFAFIKLKPWDERKGPGLSVTDVAAKAGAA 653 Query: 645 TAKVAGARVF-LVPVQDIRIGARQSDSQYEYSLKSD-DVGLLRIWEPKIRLALSNLKELE 702 A + ARVF P +G + + ++ LK + ++G + + + +L +++ Sbjct: 654 FANIRDARVFAFAPPAVSELG---NATGFDLMLKDEANLGHAALMQARNQLLGELMQDKR 710 Query: 703 DISTDQQDNGLQTT----LTIDRESAMRAGVTPQLIDSTLSDLFGQRQISTIYSGMNQYH 758 ++ + NGL+ T L++D + A GV I+ T++ +G ++ Sbjct: 711 LVAV--RPNGLEDTPEFRLSVDTDKAGALGVAMSDINDTIATAWGSSYVNDFIDKGRVKK 768 Query: 759 VVMEAAPQYWQSPETLRDTYVSLAGSSNLSPTTSSLSTPPALSASGKLNANTGLAQTIST 818 V+++ QY P + YV S+ S+ ST S S +L G+ Sbjct: 769 VMLQGDAQYRMLPSDVDRWYVR--NSAGTMVPFSAFSTASWTSGSPRLERYNGV------ 820 Query: 819 APSRQIPLAAFSRFEPTTTSLSVSHEGQFVASTLSFNLAEGVSLSQATAAIDRAMAQLGV 878 PS +I L L S +A A ++ A+A++ Sbjct: 821 -PSMEI---------------------------LGMALPGAASSGEAMAIVEAALAKM-- 850 Query: 879 PTNVLGTFAGTANAFQSSTSSQPLLILTALLAVYIVLGILYESLIHPITIISTLPSAGVG 938 P + + G + ++S+ +L ++L V++ L LYES P ++I +P G Sbjct: 851 PPGIGYEWTGLSLQEKASSGKTGILYGVSILIVFLALAALYESWAVPFSVILVVPLGVFG 910 Query: 939 ALLALMVTGTDFSLIALIGVILLIGIVKKNAIMMIDFALEAERHEGKSPREAIYQACLLR 998 ALL M+T + +G++ IG+ KNAI++++FA + H GKS EA +A +R Sbjct: 911 ALLGAMLTWKMNDVYFQVGLLTTIGLACKNAILIVEFAKDLYEH-GKSLVEATMEAVRMR 969 Query: 999 FRPILMTTMAALLGALPLMLGTGVGSELRQPLGITMVGGLLVSQVLTLFTTPVIYL 1054 RPILMT++A +LG LP++LG+G G+ + LG ++GG+L VL +F P+ ++ Sbjct: 970 LRPILMTSLAFILGVLPMVLGSGAGAGAQHALGTAVIGGMLSGTVLAVFFVPLFFV 1025 Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 38/104 (36%), Positives = 65/104 (62%), Gaps = 8/104 (7%) Query: 1081 KNAIMMVDFAIDAERNRGMSPRDAIFEACKLRFRPIMMTTMAALLGAIPLAIGHGDGAEL 1140 KNAI++V+FA D + G S +A EA ++R RPI+MT++A +LG +P+ +G G GA Sbjct: 939 KNAILIVEFAKDLYEH-GKSLVEATMEAVRMRLRPILMTSLAFILGVLPMVLGSGAGAGA 997 Query: 1141 RQPLGISIVGGLVVSQLLTLYTTPVVYLYMERLSSWSKRRFGRK 1184 + LG +++GG++ +L ++ P+ ++ + L FGRK Sbjct: 998 QHALGTAVIGGMLSGTVLAVFFVPLFFVIIMTL-------FGRK 1034 >gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1051 Score = 391 bits (1004), Expect = e-109, Method: Compositional matrix adjust. Identities = 334/1103 (30%), Positives = 551/1103 (49%), Gaps = 104/1103 (9%) Query: 7 FIQRPIATTLLTIGIALAGIVAFRLLPVSPLPQVDYPTISISASMPGASPETMAATVATP 66 FI RPI ++ I I L G+++ R L + P + P ++I A+ GAS +T+ +V Sbjct: 5 FIDRPIFAWVIAIIIMLGGMMSIRSLSLEQYPDIAPPKVNIKATYTGASAKTLEDSVTQV 64 Query: 67 LERAMGAIAGVTEMTSTSSQNSTR-ITLQFDLSRDIDGAARDVQAALNAARNLLPTGMPS 125 +E+ M + + M+++SS + ++L F + D A VQ L LP + + Sbjct: 65 IEQQMKGLDNLQYMSASSSSAGSATVSLTFTAGTNPDVAQMQVQNKLQQVTARLPQAVQN 124 Query: 126 NPTYRKVNPADAPIL-ILAMTSDT--MTQGQMYDAADSIVAQKLSQVRGVGQVSVGGSSQ 182 N V A IL +L++TSD +T + D S + ++S+V GVG V+ G++ Sbjct: 125 NGV--TVTKASTDILMVLSLTSDDPRITSIDIGDFISSTLTDQISRVEGVGDVTAFGTNY 182 Query: 183 PAVRIELNPTALNKYGIGTADVRTAVAATNANRPKGLL------EDQDRNWQIYANDQAK 236 A+RI ++P L KY + +D+ +A+ A N G + Q N I A + Sbjct: 183 -AMRIWIDPAKLQKYALMPSDITSALQAQNTEVSAGEIGALPAQPGQQINATITARSKLT 241 Query: 237 TAAEYAPLIV-SYRNGTPVRVQDVAEVRDSVADVRNAGSSNGKPSVLIIINRQPGANIID 295 T E+ +IV S +G+ V++ DVA V + A NGKPS + I GAN + Sbjct: 242 TPDEFRNIIVKSSVDGSVVKLSDVARVELGGESYQVASQQNGKPSSALAIQLATGANALA 301 Query: 296 TVDNVRELLPQLQASIPSAIDMK--VVLDRTPTIRASLKETEFTLILSVALVIMVVFLFL 353 T D V++ L +L+ P+++ +K + D TP +R SL+E TLI ++ LV+++++LFL Sbjct: 302 TADAVKKKLAELEPYFPASMKLKTNIAYDTTPFVRVSLEEVVKTLIEAIVLVVLIMYLFL 361 Query: 354 RNARATLIPAVAVPVSLIGTFGVMYLAGFSLDNLSLMALTIATGFVVDDAIVVLENISRH 413 +N RAT IPA+ VPV L+GTFG++ + G+S++ L++ + +A G +VDDAIVV+EN+ R Sbjct: 362 QNIRATFIPAITVPVVLLGTFGILAMFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERL 421 Query: 414 I-ESGMKPYKAALLGAREVGFTVLSMSISLIAVFIPILMMEGIVGRLFREFAITLSVAIL 472 + E + P +A +E+ ++ +++ L AVFIP+ G G ++R+F+IT+ A+ Sbjct: 422 MSEEKLSPKEATRKSMQEITGALVGIAMVLSAVFIPMAFFGGSTGVIYRQFSITIVSAMA 481 Query: 473 VSLVVSLTTTPMMCAQLLRHDPAADAARRQRR-HPWLQKIADQSAAIFEDMLLAYQRTLA 531 +S++V+LT TP +CA LL+ P A +Q R W + D+SA YQ +A Sbjct: 482 LSVMVALTLTPALCATLLK--PHAGGHVQQGRFFTWFNRSFDRSAT-------RYQGGVA 532 Query: 532 WALRAAP--LMMLILLATIALNVYLYKAIPKGFFPQQDTGRLVGGIRGDQAISFQAMRTK 589 L+ L+M L+A +A+ V L+ +P F P++D G L+ I+ + + T Sbjct: 533 GLLKRGKRGLLMYALIA-VAMAV-LFMRLPTSFLPEEDQGVLMAQIQLPTGATAEQTATV 590 Query: 590 LNEFIDIVRADP-AVSDVVAF----TGGQRRNGGFMYVTLKPLSERK---DSADKVVARL 641 + + P +V V+A GG +NG ++ LK +R SA ++V R Sbjct: 591 VKTVQEYFMNKPESVESVLAIVGAGVGGNSQNGARAFIRLKDWEQRTGAGQSASELVRRA 650 Query: 642 RIKTAKVAGARVFLVPVQDIRIGARQSDSQYEYSLKSDDVG------LLRIWEPKIRLAL 695 +K+ GARVFL+ +R G QS + L+ DVG LL+ + ++LA Sbjct: 651 NADLSKIRGARVFLMNPPAVR-GLGQSSG---FDLELKDVGGVGHDALLQARDQFLQLAR 706 Query: 696 SNLKELEDISTDQQDNGLQTTLTIDRESAMRAGVTPQLIDSTLSDLFGQRQISTIYSGMN 755 SN L ++ T D+ Q + ID A + I++TL+ G ++ S Sbjct: 707 SN-ALLANVRTTGLDDTPQLRVAIDDRKADALSIATSDINATLATAMGGTYVNDFLSNGR 765 Query: 756 QYHVVMEAAPQYWQSPETLRDTYVSLAGSSNLSPTTSSLSTPPALSASGKLNANTGLAQT 815 V ++ + + L YV Sbjct: 766 VKKVYVQGDSAFRMQADDLNRWYV------------------------------------ 789 Query: 816 ISTAPSRQIPLAAFSRFEPTTT-SLSVSHEGQFVASTLSFNL----AEGVSLSQATAAID 870 A S+ +P AAF + T SL + G SF + A GVS A A ++ Sbjct: 790 -RNAASQMVPFAAFMSSQWTYGPSLLERYNG-----VSSFEIVGEPAAGVSSGTAMAEVE 843 Query: 871 RAMAQLGVPTNVLGTFAGTANAFQSSTSSQPLLILTALLAVYIVLGILYESLIHPITIIS 930 + +AQL P + + G++ + S + P+L ++L V++ L LYES P +I Sbjct: 844 KLVAQL--PAGIGFEWTGSSYQERLSGNQAPMLYAISILFVFLCLAALYESWSVPFAVIL 901 Query: 931 TLPSAGVGALLALMVTGTDFSLIALIGVILLIGIVKKNAIMMIDFALEAERHE-GKSPRE 989 +P +G +L + G + +G++ +G+ KNAI++++FA + HE GKS E Sbjct: 902 AVPLGIIGTVLLTGIFGMSNDVYFQVGLLTTVGLSAKNAILIVEFA--KQLHESGKSLWE 959 Query: 990 AIYQACLLRFRPILMTTMAALLGALPLMLGTGVGSELRQPLGITMVGGLLVSQVLTLFTT 1049 A +A LR RPILMT++A + G LPL + +G GS R+ +G ++GG+L + +L +F Sbjct: 960 ATLEAVQLRLRPILMTSLAFMFGVLPLAVASGAGSASRRAIGTGVLGGMLSATLLGIFFV 1019 Query: 1050 PVIYLGFDS-LGRR-LRAERHHD 1070 P+ Y + L RR R R D Sbjct: 1020 PLFYYLIGAWLDRRAARKPRQDD 1042 Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 41/112 (36%), Positives = 69/112 (61%), Gaps = 4/112 (3%) Query: 1081 KNAIMMVDFAIDAERNRGMSPRDAIFEACKLRFRPIMMTTMAALLGAIPLAIGHGDGAEL 1140 KNAI++V+FA + G S +A EA +LR RPI+MT++A + G +PLA+ G G+ Sbjct: 938 KNAILIVEFAKQLHES-GKSLWEATLEAVQLRLRPILMTSLAFMFGVLPLAVASGAGSAS 996 Query: 1141 RQPLGISIVGGLVVSQLLTLYTTPVVYLYMERLSSWSKRRFGRKNKTETSAA 1192 R+ +G ++GG++ + LL ++ P+ Y Y+ + +W RR RK + + A Sbjct: 997 RRAIGTGVLGGMLSATLLGIFFVPLFY-YL--IGAWLDRRAARKPRQDDDHA 1045 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.134 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 3,032,539 Number of extensions: 116033 Number of successful extensions: 601 Number of sequences better than 1.0e-08: 13 Number of HSP's gapped: 535 Number of HSP's successfully gapped: 29 Length of query: 1192 Length of database: 1,619,870 Length adjustment: 96 Effective length of query: 1096 Effective length of database: 1,165,310 Effective search space: 1277179760 Effective search space used: 1277179760 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 136 (57.0 bits)