BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0057.p (465 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310848|ref|YP_003774940.1| two component sensor histidine ... 933 0.0 gi|300313666|ref|YP_003777758.1| two component sensor histidine ... 244 2e-65 gi|300313829|ref|YP_003777921.1| sensor histidine kinase [Herbas... 174 2e-44 gi|300311468|ref|YP_003775560.1| oxidative stress resistance two... 130 3e-31 gi|300311514|ref|YP_003775606.1| two component sensor histidine ... 110 2e-25 >gi|300310848|ref|YP_003774940.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 465 Score = 933 bits (2411), Expect = 0.0, Method: Compositional matrix adjust. Identities = 461/465 (99%), Positives = 464/465 (99%) Query: 1 MKNFLGSIGNRIFFLLLGGIVVAVFATNWLAGNERRNTLRELRFQHLADRVEQIVQAVDN 60 MKNFLGSIGNRIFFLLLGGIVVAVFATNWLAGNERRNTLRELRFQHLADRVEQIVQAVDN Sbjct: 1 MKNFLGSIGNRIFFLLLGGIVVAVFATNWLAGNERRNTLRELRFQHLADRVEQIVQAVDN 60 Query: 61 IPPAQRPIVLQAASNFGFEARMVEDMNEAIGPNASPSPSTSPLTEMLQARLGEDRKIAVQ 120 IPPAQRPIVLQAASNFGFEARMVEDMN+AIGP+ASPSPSTSPLTEMLQARLGEDRKIAVQ Sbjct: 61 IPPAQRPIVLQAASNFGFEARMVEDMNDAIGPDASPSPSTSPLTEMLQARLGEDRKIAVQ 120 Query: 121 RESECPPLRTDDPRAPRRDTCRVIYISLHDQALMRLRLHQPGEPPALRARAGPGGPASLF 180 RESECPPLRTDD RAPRRDTCRVIYISLHDQALMRLRLHQPGEPPALRARAGPGGPASLF Sbjct: 121 RESECPPLRTDDARAPRRDTCRVIYISLHDQALMRLRLHQPGEPPALRARAGPGGPASLF 180 Query: 181 GLQYILLFLVLIAMLAWLVARMATRPIRQLAQAASRLGSDIDHAPLAETGPTEIRQAAHA 240 GLQYILLFLVLIAMLAWLVARMATRPIRQLAQAASRLGSDIDHAPLAETGPTEIRQAAHA Sbjct: 181 GLQYILLFLVLIAMLAWLVARMATRPIRQLAQAASRLGSDIDHAPLAETGPTEIRQAAHA 240 Query: 241 FNAMQARIRRQIQHRTHMLAAITHDLQTPLTRMRLRLEKVSDPGLQQKLIDDLGVMHGMV 300 FNAMQARIRRQIQHRTHMLAAITHDLQTPLTRMRLRLEKVSDPGLQQKLIDDLGVMHGMV Sbjct: 241 FNAMQARIRRQIQHRTHMLAAITHDLQTPLTRMRLRLEKVSDPGLQQKLIDDLGVMHGMV 300 Query: 301 REGLDLARSMDSSEKIQALDIDSLLDSVCADAADAGQDVALQGSTRAFVMAQPGALRRCL 360 REGLDLARSMDSSEKIQALDIDSLLDSVCADAADAGQDVALQGSTRAFVMAQPGALRRCL Sbjct: 301 REGLDLARSMDSSEKIQALDIDSLLDSVCADAADAGQDVALQGSTRAFVMAQPGALRRCL 360 Query: 361 TNLIDNACKYGKSARVSIALEQQKIAIRIRDQGPGIPESELEAVFEPFYRLEASRSRDTG 420 TNLIDNACKYGKSARVSIALEQQKIAIRIRDQGPGIPESELEAVFEPFYRLEASRSRDTG Sbjct: 361 TNLIDNACKYGKSARVSIALEQQKIAIRIRDQGPGIPESELEAVFEPFYRLEASRSRDTG 420 Query: 421 GTGLGLTIALNIAENHHGQLRLRNLAKGGLEVLLELPPMTPAKNR 465 GTGLGLTIALNIAENHHGQLRLRNLA+GGLEVLLELPPMTPAKNR Sbjct: 421 GTGLGLTIALNIAENHHGQLRLRNLAEGGLEVLLELPPMTPAKNR 465 >gi|300313666|ref|YP_003777758.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 479 Score = 244 bits (622), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 160/476 (33%), Positives = 253/476 (53%), Gaps = 39/476 (8%) Query: 7 SIGNRIFFLLLGGIVVAVFATNWLAGNERRNTLRELRFQHLADRVEQIVQAVDNIPPAQR 66 ++ R+ +L+ G++ A T + + R T E+ + A + V +D+ P QR Sbjct: 17 TLSGRLALILVAGMLAAQMLTGTIWYDMRYGTAMEMPTRLAAAHLADAVLILDDAPATQR 76 Query: 67 PIVLQAASNFGFEARMVEDMNEAIGPNASPSPSTSPLT---------------------- 104 + + + F + + ++ A +P++SP T Sbjct: 77 QALAHSLTRAQFVLSLPDVVDRADLAVPGLAPASSPTTHADQGVVDLFGTVLQQHAGPRP 136 Query: 105 -EMLQARLGEDRKIAVQRESECPPLRTDDPRAPRRDTCRVIYISLHDQALMRLRLH--QP 161 +MLQ LG D + A S LR + P R + ++L D + ++ + Q Sbjct: 137 WKMLQ--LGLDDQHANAESSWWTLLRDEFPHGRFR-----VLVTLKDGSWLQADIEEGQA 189 Query: 162 GEPPALRARAGPGGPASLFGLQYILLFLVLIAMLAWLVARMATRPIRQLAQAASRLGSDI 221 G A P A + ++ L + + ++AW+ R+A +P++ +A+AA +LG +I Sbjct: 190 GMSTA------PHSAAFDYFMRIYALRIFAVVLIAWMAVRLAMKPLQVMAEAAEKLGGNI 243 Query: 222 DHAPLAETGPTEIRQAAHAFNAMQARIRRQIQHRTHMLAAITHDLQTPLTRMRLRLEKVS 281 APLA GP E+ AA AFNAMQ RI I RT LAA++HDL++P+TRM+LR E + Sbjct: 244 RSAPLATDGPLEVSTAAQAFNAMQRRIIDNIAERTRFLAAVSHDLRSPITRMKLRTEMLP 303 Query: 282 DPGLQQKLIDDLGVMHGMVREGLDLARSMDSSEKIQALDIDSLLDSVCADAADAGQDVAL 341 D ++K DL M ++ L++ + +D E+ Q +D+DSLL+S+ D A+ G +V L Sbjct: 304 DERGKEKFRKDLDEMDALISATLNVVQDIDVQERPQLIDLDSLLESLRTDQAEVGGEVTL 363 Query: 342 QGSTRAFVMAQPGALRRCLTNLIDNACKYGKSARVSIALEQQKIAIRIRDQGPGIPESEL 401 G A + P +LRRCL NL++NA +YG+ ARV + + ++ IR+ D GPGIPE+ L Sbjct: 364 SGHA-APLQGYPRSLRRCLQNLVENAVRYGQRARVQLQDDADQVCIRVDDDGPGIPEALL 422 Query: 402 EAVFEPFYRLEASRSRDTGGTGLGLTIALNIAENHHGQLRLRNLAKGGLEVLLELP 457 E V EPFYRLE SR+ TGG GLGL+IA + + H G ++L N GGL V + +P Sbjct: 423 ERVQEPFYRLERSRNAGTGGFGLGLSIAATVVQAHRGVMKLVNRPGGGLRVEILIP 478 >gi|300313829|ref|YP_003777921.1| sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 478 Score = 174 bits (440), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 102/263 (38%), Positives = 150/263 (57%), Gaps = 5/263 (1%) Query: 199 VARMATRPIRQLAQAASRLGSDIDHAPLAETGPTEIRQAAHAFNAMQARIRRQIQHRTHM 258 V R TRP+ LA AA G L ETG E + A AF+ M+ RI+R ++ R + Sbjct: 215 VVRWTTRPLAALADAAEAFGKGETVPSLPETGSREYVKTARAFSGMRERIKRYLEDRERL 274 Query: 259 LAAITHDLQTPLTRMRLRLEKVSDPGLQQKLIDDLGVMHGMVREGLDLARSMDSSEKIQA 318 +I+HDL+TP+TR++LR E + D ++ DDL + MV+ L + D E Sbjct: 275 FVSISHDLRTPITRLKLRTELMDDDAMRTDFHDDLDELDMMVKGALQSVKDSDIHENRTE 334 Query: 319 LDIDSLLDSVCADAADAGQDVALQGSTRAFVMAQPGALRRCLTNLIDNACKYGKSARVSI 378 + +D+L+ + DA AG ++A S V+A+P AL+R + NL DNA YG+ +SI Sbjct: 335 VRLDALVLRMIRDARLAGHEIAFTPSG-INVIAKPLALKRAIGNLFDNALYYGQKVEISI 393 Query: 379 ----ALEQQKIAIRIRDQGPGIPESELEAVFEPFYRLEASRSRDTGGTGLGLTIALNIAE 434 E + I IRD GPG+PE + +F+P+ RLE R++++GG GLGL I+ NI + Sbjct: 394 RPSPGAEGDLVEIEIRDHGPGVPEDAMGTLFQPYVRLEHGRAQNSGGMGLGLGISRNIVQ 453 Query: 435 NHHGQLRLRNLAKGGLEVLLELP 457 H G+L LRN +GGL + LP Sbjct: 454 AHGGELLLRNHPEGGLMATIILP 476 >gi|300311468|ref|YP_003775560.1| oxidative stress resistance two component transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 455 Score = 130 bits (326), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 133/472 (28%), Positives = 208/472 (44%), Gaps = 54/472 (11%) Query: 4 FLGSIGNRIFFLLLGGIVVAVFATNWLAGNERRNTLRELRFQHLADRVEQIVQAV----- 58 F + R FFLL I ++ A W+A R R R + LA ++ +V Sbjct: 12 FSNGLFWRTFFLLTFLITASMVA--WVAS--FRMVERGPRAEQLAAQIVSVVTITRAALT 67 Query: 59 DNIPPAQRPIVLQAASNFGFEARMVEDMNEAIGPNASPSPSTSPLTEMLQARLGEDRKIA 118 + P +R ++ ASN G +E + + P SP L ++ L E+ A Sbjct: 68 HSAPEMRRELLFDLASNEGIRIYPLEKSDRIVPPE--DSPIVPELEYYVRQSLDENTLFA 125 Query: 119 VQRESECPPLRTDDPRAPRRDTCRVIYISLH-DQALMRLRLHQPGEPPALRARAGPGGPA 177 + +IS + D L L R R Sbjct: 126 -----------------SSVNDVEGFWISFNIDDDKYWLMLD--------RGRLDRTSSL 160 Query: 178 SLFGLQYILLFLVLIAMLAWLVARMATRPIRQLAQAASRLGSDIDHAPLAETGPTEIRQA 237 G I LFL LI A ++ + +P+ +L AA + PL E+GPTEI +A Sbjct: 161 QWLGWGSIALFLSLIG--AVFISTLINQPLARLTAAARAIAKGRQPEPLPESGPTEIEEA 218 Query: 238 AHAFNAMQARIRRQIQHRTHMLAAITHDLQTPLTRMRLRLE--KVSDPGLQQKLIDDLGV 295 +FN M A + R R +LA I+HDL+TPL RM+L +E +SD + + DL Sbjct: 219 NRSFNQMVADLNRIESDRALILAGISHDLRTPLARMQLEVEMANLSDEA-RDGMHSDLAQ 277 Query: 296 MHGMVREGLDLARSMDSSEKIQALDIDSLLDSVCADAADAGQ-DVALQGSTRAFVMAQPG 354 M ++ + LD A+ D+S ++ +D+ +L V +A+ V Q + V Sbjct: 278 MDSIIGQFLDYAKPFDTS-SLETIDLADVLQDVAGNASRLSDIRVHTQITPDTQVAGNGT 336 Query: 355 ALRRCLTNLIDNACKYGKSARVSIA-------LEQQKIAIRIRDQGPGIPESELEAVFEP 407 L R +NL++NA +YGK+ A +E ++ + + D GPG+P +E E + P Sbjct: 337 ELARVFSNLVENARRYGKTEGTDCAEIDIRSRIEGHQVVVEVADHGPGVPVNECERLLRP 396 Query: 408 FYRLEASRSRDTGGTGLGLTIALNIAENHHGQLRLRNL--AKGGLEVLLELP 457 F RL+ +R + G+GLGL I I H+G+L L+ + GL V + LP Sbjct: 397 FTRLDTARGQ-ANGSGLGLAIVNRIVLKHNGKLLLKGHEETRSGLLVQITLP 447 >gi|300311514|ref|YP_003775606.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 473 Score = 110 bits (275), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 89/316 (28%), Positives = 159/316 (50%), Gaps = 32/316 (10%) Query: 170 RAGPGGPASLFG-----LQYILLFLVLIAMLAWLVARMATRPIRQLAQAASRLGS---DI 221 R G GP S+F + +L LV +LAW + PI L A ++ + D+ Sbjct: 152 RIGERGPKSMFFPTMPIVVALLASLVFALLLAWYF----SHPIGHLKNAFNQAANGNLDL 207 Query: 222 DHAPLAETGPTEIRQAAHAFNAMQARIRRQIQHRTHMLAAITHDLQTPLTRMRL-----R 276 + P+ E+ F+ M A++R ++ + +L ++H+L++P+ R+++ R Sbjct: 208 ELEPVMSARNDELADLGRDFDVMTAKLRTLMESQRRLLHDVSHELRSPIARLQVAIGLAR 267 Query: 277 LEKVSDPGLQQKLIDDLGV-MHGMVREGLDLAR-------SMDSSEKIQALDIDSLLDSV 328 ++ L + I+ V M +V E L L+R SM+ I+A+ + +++ Sbjct: 268 VQDKDKLDLTLERIERESVRMDKLVGELLTLSRLEANVPGSMEEPIAIEAM-LGDMINDA 326 Query: 329 CADAADAGQDVALQGSTRAFVMAQPGALRRCLTNLIDNACKY---GKSARVSIALEQ--Q 383 +A G+ V Q R V P L R + N++ NA K+ G + ++ L++ + Sbjct: 327 SFEAEAIGKHVDDQLDCRVQVKGNPELLYRAIENVLRNAIKHTAPGTTVQIHTQLDEINK 386 Query: 384 KIAIRIRDQGPGIPESELEAVFEPFYRLEASRSRDTGGTGLGLTIALNIAENHHGQLRLR 443 + + I D+GPG+PE E+ ++FE F+R ++S ++ G GLGL+IA I E H G ++ Sbjct: 387 LLHLSILDRGPGVPEEEMNSIFELFFRSSRTKS-NSSGHGLGLSIARRIVEAHQGFIQAA 445 Query: 444 NLAKGGLEVLLELPPM 459 N + GGL V + LP M Sbjct: 446 NRSNGGLRVDITLPFM 461 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.136 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,241,155 Number of extensions: 46326 Number of successful extensions: 343 Number of sequences better than 1.0e-08: 38 Number of HSP's gapped: 305 Number of HSP's successfully gapped: 38 Length of query: 465 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 376 Effective length of database: 1,198,455 Effective search space: 450619080 Effective search space used: 450619080 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)