BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0041.p
         (251 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310833|ref|YP_003774925.1| electron transfer flavoprotein ...   493   e-141
gi|300312145|ref|YP_003776237.1| flavoprotein subunit subunit be...    93   2e-20

>gi|300310833|ref|YP_003774925.1| electron transfer flavoprotein
           subunit beta [Herbaspirillum seropedicae SmR1]
          Length = 251

 Score =  493 bits (1269), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 251/251 (100%), Positives = 251/251 (100%)

Query: 1   MKVLVPVKRVVDYNVKVRVKSDGSGVDIANVKMSMNPFDEIAVEEAVRLKEGGKVTEVIA 60
           MKVLVPVKRVVDYNVKVRVKSDGSGVDIANVKMSMNPFDEIAVEEAVRLKEGGKVTEVIA
Sbjct: 1   MKVLVPVKRVVDYNVKVRVKSDGSGVDIANVKMSMNPFDEIAVEEAVRLKEGGKVTEVIA 60

Query: 61  VSAGVTQCQETLRTAMAIGADRGILAEVGADVELQPLAVAKILKALAEKEQPQLIILGKQ 120
           VSAGVTQCQETLRTAMAIGADRGILAEVGADVELQPLAVAKILKALAEKEQPQLIILGKQ
Sbjct: 61  VSAGVTQCQETLRTAMAIGADRGILAEVGADVELQPLAVAKILKALAEKEQPQLIILGKQ 120

Query: 121 AIDDDCNQTGQMLAALLGWPQATFASKVVLEEGKVTVTREVDGGLETLALTLPAIITTDL 180
           AIDDDCNQTGQMLAALLGWPQATFASKVVLEEGKVTVTREVDGGLETLALTLPAIITTDL
Sbjct: 121 AIDDDCNQTGQMLAALLGWPQATFASKVVLEEGKVTVTREVDGGLETLALTLPAIITTDL 180

Query: 181 RLNEPRYVTLPNIMKAKKKQLDTVKPEELGVDVAPRVKTLKVAEPAKRSAGVKVPDVATL 240
           RLNEPRYVTLPNIMKAKKKQLDTVKPEELGVDVAPRVKTLKVAEPAKRSAGVKVPDVATL
Sbjct: 181 RLNEPRYVTLPNIMKAKKKQLDTVKPEELGVDVAPRVKTLKVAEPAKRSAGVKVPDVATL 240

Query: 241 VAKLKNEAKVI 251
           VAKLKNEAKVI
Sbjct: 241 VAKLKNEAKVI 251


>gi|300312145|ref|YP_003776237.1| flavoprotein subunit subunit beta
           [Herbaspirillum seropedicae SmR1]
          Length = 281

 Score = 92.8 bits (229), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 116/221 (52%), Gaps = 13/221 (5%)

Query: 1   MKVLVPVKRVVDYNVKVRVKSDGSGVDIANVKMSMNPFDEIAVEEAVRLKE--GGKVTEV 58
           M ++V +K+V D + ++RV    + +    V   +NP+D  ++EEA+R+K+  GG+VT  
Sbjct: 1   MHIVVCIKQVPD-SAQIRVHPVTNTIMRQGVPAIINPYDLFSLEEALRIKDQVGGRVT-- 57

Query: 59  IAVSAGVTQCQETLRTAMAIGADRGIL----AEVGADVELQPLAVAKILKALAEKEQPQL 114
             ++ G  Q +  LR  ++ GAD  IL    A  GAD      A+A  ++ +++ +   L
Sbjct: 58  -VLTMGPPQAEAALRKCISFGADDAILVTDRAFAGADTLATSYALASAIQRISQDQAVDL 116

Query: 115 IILGKQAIDDDCNQTGQMLAALLGWPQATFASKVVLEE---GKVTVTREVDGGLETLALT 171
           ++ GKQ ID D  Q G  +A  L     T+ SK+V  +    ++ + R  +GG++ L   
Sbjct: 117 VLAGKQTIDGDTAQVGPGIAKRLDLQLLTYVSKIVSLDPIAREIVIQRRAEGGVQVLQTR 176

Query: 172 LPAIITTDLRLNEPRYVTLPNIMKAKKKQLDTVKPEELGVD 212
           LP +IT     NE R+ T+ N+ +A +  + T      G++
Sbjct: 177 LPCLITMLEGSNEMRFATMENMFRAARHPIRTWDRTAAGIE 217


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.132    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 659,010
Number of extensions: 24606
Number of successful extensions: 92
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 2
Length of query: 251
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 168
Effective length of database: 1,226,865
Effective search space: 206113320
Effective search space used: 206113320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 129 (54.3 bits)