BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0037.p (244 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPa... 501 e-143 gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPa... 336 1e-93 gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporte... 313 1e-86 gi|300309583|ref|YP_003773675.1| amino acid ABC transporter ATPa... 308 2e-85 gi|300313887|ref|YP_003777979.1| amino acid ABC transporter ATPa... 295 2e-81 >gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 501 bits (1291), Expect = e-143, Method: Compositional matrix adjust. Identities = 244/244 (100%), Positives = 244/244 (100%) Query: 1 MPIVEINNITKRFGSNQVLNGISLSVERGQVVAIIGRSGSGKSTMLRCINGLETIDGGSI 60 MPIVEINNITKRFGSNQVLNGISLSVERGQVVAIIGRSGSGKSTMLRCINGLETIDGGSI Sbjct: 1 MPIVEINNITKRFGSNQVLNGISLSVERGQVVAIIGRSGSGKSTMLRCINGLETIDGGSI 60 Query: 61 TVAGHKLTHKHEHLIELRKDVGMVFQHYNLFPHLTVEENIMLSPRIVKKTATETARETAI 120 TVAGHKLTHKHEHLIELRKDVGMVFQHYNLFPHLTVEENIMLSPRIVKKTATETARETAI Sbjct: 61 TVAGHKLTHKHEHLIELRKDVGMVFQHYNLFPHLTVEENIMLSPRIVKKTATETARETAI 120 Query: 121 KVLKQVGLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELTAEVLKV 180 KVLKQVGLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELTAEVLKV Sbjct: 121 KVLKQVGLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELTAEVLKV 180 Query: 181 MEELARGGMTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSEEFFADPQTPEARQFIGA 240 MEELARGGMTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSEEFFADPQTPEARQFIGA Sbjct: 181 MEELARGGMTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSEEFFADPQTPEARQFIGA 240 Query: 241 GAIK 244 GAIK Sbjct: 241 GAIK 244 >gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 336 bits (861), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 160/239 (66%), Positives = 199/239 (83%), Gaps = 1/239 (0%) Query: 3 IVEINNITKRFGSNQVLNGISLSVERGQVVAIIGRSGSGKSTMLRCINGLETIDGGSITV 62 IV+I ++ K FGSN+VLNG+SL V++GQ+VAIIG+SGSGKST+LRC+NGLE +D G I V Sbjct: 4 IVKIKDLHKSFGSNKVLNGVSLDVQKGQMVAIIGKSGSGKSTLLRCLNGLEKVDAGDIQV 63 Query: 63 AGHKLTHKHE-HLIELRKDVGMVFQHYNLFPHLTVEENIMLSPRIVKKTATETARETAIK 121 GH + H + +L ELRK VG+VFQ YNLFPHLTVE NI L+ +KK +TE A+ A K Sbjct: 64 CGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTEQAKTIAHK 123 Query: 122 VLKQVGLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELTAEVLKVM 181 VL+ VGL++K+DAYPEQLSGGQ QRVAIARSLAM P++MLFDEVTSALDPELTAEVLKVM Sbjct: 124 VLQLVGLENKKDAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEVLKVM 183 Query: 182 EELARGGMTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSEEFFADPQTPEARQFIGA 240 E+LARGGMTM+LVTHEM FAR++AD+ VFMHQG+VWE P +E F+ P+T E ++F+ + Sbjct: 184 EDLARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWEIGPPDELFSHPKTAELQKFVSS 242 >gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 313 bits (801), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 151/239 (63%), Positives = 185/239 (77%) Query: 1 MPIVEINNITKRFGSNQVLNGISLSVERGQVVAIIGRSGSGKSTMLRCINGLETIDGGSI 60 MP++ I+N+ KRFG N+VL GISL VE G+V+AIIG+SGSGKST+LRCINGLE+ID G+I Sbjct: 1 MPLIAIDNVKKRFGDNEVLKGISLDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGNI 60 Query: 61 TVAGHKLTHKHEHLIELRKDVGMVFQHYNLFPHLTVEENIMLSPRIVKKTATETARETAI 120 +VAG KL L LR VGM+FQ +NLFPHL+V N+M++P IVK + A +TA Sbjct: 61 SVAGAKLGASELELRNLRLKVGMIFQQFNLFPHLSVGRNVMIAPMIVKGVSEAEAMKTAK 120 Query: 121 KVLKQVGLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELTAEVLKV 180 L++VGL HK DAYP+QLSGGQQQRVAIAR+L+M PQ +L DE+TSALDPEL EVL V Sbjct: 121 ANLEKVGLGHKFDAYPDQLSGGQQQRVAIARALSMSPQALLCDEITSALDPELVNEVLTV 180 Query: 181 MEELARGGMTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSEEFFADPQTPEARQFIG 239 M LA+ GMT+L+VTHEM FAR V + VFMHQGKV E P EE F +P+TPE +QFIG Sbjct: 181 MRGLAKEGMTLLMVTHEMRFAREVCNRLVFMHQGKVHEIGPPEELFGNPKTPELQQFIG 239 >gi|300309583|ref|YP_003773675.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 308 bits (790), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 155/239 (64%), Positives = 180/239 (75%), Gaps = 1/239 (0%) Query: 3 IVEINNITKRFGSNQVLNGISLSVERGQVVAIIGRSGSGKSTMLRCINGLETIDGGSITV 62 +VE+ + KRFGSN VL G+S V RG+VVAIIG+SGSGKST LRCIN LE ID G I+V Sbjct: 4 VVELQGVHKRFGSNTVLRGVSFQVARGEVVAIIGKSGSGKSTALRCINRLEQIDAGQISV 63 Query: 63 AGHKLTHKHEHLIELRKDVGMVFQHYNLFPHLTVEENIMLSPRIVKKTATETARETAIKV 122 GH L L LR+DVG+VFQ YNLFPHLTV +NI L P VK+ + A+ A +V Sbjct: 64 CGHALHAAGLDLRGLRRDVGIVFQGYNLFPHLTVLQNITLGPTAVKRMPADQAQTLAQQV 123 Query: 123 LKQVGLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELTAEVLKVME 182 L +VGL K AYPEQLSGGQQQRVAIARSLA++PQ+MLFDEVTSALDPELT EVLKVME Sbjct: 124 LARVGLADKAGAYPEQLSGGQQQRVAIARSLALQPQLMLFDEVTSALDPELTGEVLKVME 183 Query: 183 ELARGGMTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSEEFFADPQTPEARQFIGAG 241 ++A GMTM+LVTHEM FARRVAD +FMHQG+VWE + E P TPE R F+G G Sbjct: 184 QMASEGMTMILVTHEMAFARRVADQVIFMHQGQVWE-QGGPEILDAPVTPELRSFVGTG 241 >gi|300313887|ref|YP_003777979.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 264 Score = 295 bits (755), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 151/238 (63%), Positives = 181/238 (76%), Gaps = 1/238 (0%) Query: 3 IVEINNITKRFGSNQVLNGISLSVERGQVVAIIGRSGSGKSTMLRCINGLETIDGGSITV 62 IV+++ + K FG NQVL G+S V RG+++AIIG SGSGKST LRCI+ LETID GSI V Sbjct: 26 IVKLDQVYKSFGDNQVLKGVSFEVARGEMIAIIGASGSGKSTALRCIDRLETIDSGSIEV 85 Query: 63 AGHKLTHKHEHLIELRKDVGMVFQHYNLFPHLTVEENIMLSPRIVKKTATETARETAIKV 122 AG ++ L +LR++VG+VFQ YNLFPHL V EN+ML+ R VK+ AR A+ Sbjct: 86 AGIRVDDPQVDLHKLRREVGIVFQSYNLFPHLNVLENVMLALRHVKQQDKAEARRVALAA 145 Query: 123 LKQVGLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELTAEVLKVME 182 L QVGLD K +AYPEQLSGGQQQRVAIARSLAM P+VMLFDEVTSALDP+LT EVL+VME Sbjct: 146 LAQVGLDEKANAYPEQLSGGQQQRVAIARSLAMAPKVMLFDEVTSALDPQLTGEVLRVME 205 Query: 183 ELARGGMTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSEEFFADPQTPEARQFIGA 240 +LA GMTMLLVTHEM FA+RVAD ++MHQG+VWE P E P TPE + F+ A Sbjct: 206 DLAANGMTMLLVTHEMNFAKRVADRIIYMHQGRVWEVGPG-EMLDHPYTPELQAFLAA 262 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.134 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 712,454 Number of extensions: 26706 Number of successful extensions: 536 Number of sequences better than 1.0e-08: 131 Number of HSP's gapped: 287 Number of HSP's successfully gapped: 145 Length of query: 244 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 161 Effective length of database: 1,226,865 Effective search space: 197525265 Effective search space used: 197525265 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)