BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0026.p (254 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310818|ref|YP_003774910.1| nitrate/sulfonate/bicarbonate A... 514 e-147 gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A... 221 4e-59 gi|300311841|ref|YP_003775933.1| nitrate/sulfonate/bicarbonate A... 190 1e-49 gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase ... 189 2e-49 gi|300310542|ref|YP_003774634.1| nitrate transporter ATPase [Her... 186 2e-48 >gi|300310818|ref|YP_003774910.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 265 Score = 514 bits (1323), Expect = e-147, Method: Compositional matrix adjust. Identities = 253/254 (99%), Positives = 254/254 (100%) Query: 1 VGLTIGSNDIMAGIDLDIRAGEFVCLLGPSGCGKSTLLNAIAGFQDVSGEISVDGKRVKG 60 VGLTIGSNDIMAGIDLDIRAGEFVCLLGPSGCGKSTLLNAIAGFQDVSGEISVDGKRVKG Sbjct: 12 VGLTIGSNDIMAGIDLDIRAGEFVCLLGPSGCGKSTLLNAIAGFQDVSGEISVDGKRVKG 71 Query: 61 PGLDRGVVFQSSEALFPWLSVRENVEYGLKLRGVASAERRAAAERYVSLVGLKHAIDKFP 120 PGLDRGVVFQSSEALFPWLSVRENVEYGLKLRGVASAERRAAAERYVSLVGLKHAIDKFP Sbjct: 72 PGLDRGVVFQSSEALFPWLSVRENVEYGLKLRGVASAERRAAAERYVSLVGLKHAIDKFP 131 Query: 121 AELSGGMRQRAQIARVLVNEPSVVLMDEPFGALDAQTREVLQSELDRIWKSTGCTIVFVT 180 AELSGGMRQRAQIARVLVNEPSVVLMDEPFGALDAQTREVLQSELDRIWKSTGCTIVFVT Sbjct: 132 AELSGGMRQRAQIARVLVNEPSVVLMDEPFGALDAQTREVLQSELDRIWKSTGCTIVFVT 191 Query: 181 HDIWEAILLADRVVTMTAGPRAHIKTIEEVHLPHPRDPADPACMALYARIRDDIGAEVTR 240 HDIWEAILLADRVVTMTAGPRAHIKTIEEVHLPHPRDPADPACMALYARIRDDIGAEVTR Sbjct: 192 HDIWEAILLADRVVTMTAGPRAHIKTIEEVHLPHPRDPADPACMALYARIRDDIGAEVTR 251 Query: 241 VLRAQGLLEEETVK 254 VLRAQGLLEEE+VK Sbjct: 252 VLRAQGLLEEESVK 265 >gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 221 bits (563), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 122/217 (56%), Positives = 145/217 (66%), Gaps = 3/217 (1%) Query: 11 MAGIDLDIRAGEFVCLLGPSGCGKSTLLNAIAGFQ-DVSGEISVDGKRVKGPGLDRGVVF 69 + I+LDI G+FVCLLGPSGCGKSTLLNAIAGF SG+I D K V PG DRG+VF Sbjct: 29 LKDINLDIPDGQFVCLLGPSGCGKSTLLNAIAGFALPSSGQILTDDKVVSEPGPDRGMVF 88 Query: 70 QSSEALFPWLSVRENVEYGLKLRGVASAERRAAAERYVSLVGLKHAIDKFPAELSGGMRQ 129 Q ALFPW++V +NV +GL+++G AE + + +GL +FP +LSGGMRQ Sbjct: 89 QEY-ALFPWMTVEQNVAFGLEIKGTPKAEIHQRVTQLLDKLGLIDFRTRFPKDLSGGMRQ 147 Query: 130 RAQIARVLVNEPSVVLMDEPFGALDAQTREVLQSELDRIWKSTGCTIVFVTHDIWEAILL 189 R IARVL + ++LMDEPFGALDA TR LQ EL RIW TIVFVTH I EAI L Sbjct: 148 RVAIARVLALDSPIMLMDEPFGALDALTRRNLQDELLRIWDEFRKTIVFVTHSIEEAIYL 207 Query: 190 ADRVVTMTAGPRAHIKTIEEVHLPHPRDPADPACMAL 226 ADR+V MT P +K V+LP RDPADP AL Sbjct: 208 ADRIVVMTYRP-GTVKRDMLVNLPRLRDPADPEFNAL 243 >gi|300311841|ref|YP_003775933.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 263 Score = 190 bits (483), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 102/207 (49%), Positives = 133/207 (64%), Gaps = 11/207 (5%) Query: 14 IDLDIRAGEFVCLLGPSGCGKSTLLNAIAGF-QDVSGEISVDGKRVKGPGLDRGVVFQSS 72 + ++ G+ LLGPSGCGKSTLL AI G+ Q SG I + G+ V PG DR +VFQ Sbjct: 40 VSFNVHPGDRYILLGPSGCGKSTLLKAIGGYLQPTSGAIRLKGREVHEPGPDRMMVFQEF 99 Query: 73 EALFPWLSVRENVEYGL----KLRGVASAERRAAAERYVSLVGLKHAIDKFPAELSGGMR 128 + L PW +VR+NVE+ L +L+G A+AER AE Y+S VGL ID +P LSGGM+ Sbjct: 100 DQLLPWKTVRQNVEFALHASGRLQGRAAAER---AEYYISKVGLAKFIDSYPHMLSGGMK 156 Query: 129 QRAQIARVLVNEPSVVLMDEPFGALDAQTREVLQSELDRIWKSTGCTIVFVTHDIWEAIL 188 QR IAR + EP V+LMDEPF ALDA TR +Q EL R+W T T++FVTH I EAI Sbjct: 157 QRVSIARGMAMEPDVLLMDEPFAALDALTRRKMQDELLRLWDDTQFTVLFVTHSIEEAIR 216 Query: 189 LADRVVTMTAGP---RAHIKTIEEVHL 212 + R++ +T P RA + +I+ L Sbjct: 217 VGTRILLLTPHPGQVRAELNSIDPSQL 243 >gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 189 bits (480), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 98/188 (52%), Positives = 125/188 (66%), Gaps = 2/188 (1%) Query: 14 IDLDIRAGEFVCLLGPSGCGKSTLLNAIAGFQDVS-GEISVDGKRVKGPGLDRGVVFQSS 72 + LDI G FV LG SGCGKSTLLNA+AGF +S G IS+DG+ V GPG +RGVVFQ Sbjct: 25 VSLDIPNGGFVVALGTSGCGKSTLLNAMAGFLPLSEGRISLDGQPVSGPGAERGVVFQK- 83 Query: 73 EALFPWLSVRENVEYGLKLRGVASAERRAAAERYVSLVGLKHAIDKFPAELSGGMRQRAQ 132 ++L PW SV++NV GLK GV+ ++ R A+ + LVGL+ P ELSGGMRQR Sbjct: 84 DSLLPWKSVQDNVALGLKFAGVSKSDSRERAQELLRLVGLQDFARAAPYELSGGMRQRVG 143 Query: 133 IARVLVNEPSVVLMDEPFGALDAQTREVLQSELDRIWKSTGCTIVFVTHDIWEAILLADR 192 +AR L P ++LMDEPFGALD+ TRE +Q L +W TG + F+TH I EA+ L Sbjct: 144 LARALAPNPKILLMDEPFGALDSMTREQMQELLVSVWARTGKQVFFITHSIEEALFLGTE 203 Query: 193 VVTMTAGP 200 V+ M+ P Sbjct: 204 VIVMSPRP 211 >gi|300310542|ref|YP_003774634.1| nitrate transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 272 Score = 186 bits (471), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 106/208 (50%), Positives = 133/208 (63%), Gaps = 5/208 (2%) Query: 14 IDLDIRAGEFVCLLGPSGCGKSTLLNAIAGFQDVS-GEISVDGKRVKGPGLDRGVVFQSS 72 I+L + GEFV L+G SGCGKSTLLN IAG S G + + + GP +R VVFQ+ Sbjct: 33 INLTVAKGEFVTLIGHSGCGKSTLLNLIAGLLKPSEGVLLCANREIGGPAPERAVVFQN- 91 Query: 73 EALFPWLSVRENVEYGLKLRGVASAERRAAAERY---VSLVGLKHAIDKFPAELSGGMRQ 129 +L PWLS EN+ G++ A+ R +R ++LVGL A +K P E+SGGM+Q Sbjct: 92 HSLLPWLSCYENIYLGVERVFGATENRTQLRDRTRAALALVGLSAAENKRPNEISGGMKQ 151 Query: 130 RAQIARVLVNEPSVVLMDEPFGALDAQTREVLQSELDRIWKSTGCTIVFVTHDIWEAILL 189 R IAR L EP V+LMDEPFGALDA TR LQ EL +I T T+V VTHD+ EA+LL Sbjct: 152 RVGIARALAMEPKVLLMDEPFGALDALTRAHLQDELLKIVAKTDSTVVMVTHDVDEAVLL 211 Query: 190 ADRVVTMTAGPRAHIKTIEEVHLPHPRD 217 +DR+V MT GP A I + EV L PRD Sbjct: 212 SDRIVMMTNGPAATIGEVLEVKLARPRD 239 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.137 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 788,169 Number of extensions: 31529 Number of successful extensions: 497 Number of sequences better than 1.0e-08: 133 Number of HSP's gapped: 314 Number of HSP's successfully gapped: 149 Length of query: 254 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 171 Effective length of database: 1,226,865 Effective search space: 209793915 Effective search space used: 209793915 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)