BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0025.p (272 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310817|ref|YP_003774909.1| nitrate/sulfonate/bicarbonate A... 494 e-141 gi|300311644|ref|YP_003775736.1| taurine ABC transporter permeas... 128 4e-31 gi|300309716|ref|YP_003773808.1| nitrate/sulfonate/bicarbonate A... 106 2e-24 gi|300310541|ref|YP_003774633.1| nitrate transporter permease [H... 102 2e-23 gi|300310979|ref|YP_003775071.1| alkanesulfonates ABC transporte... 101 5e-23 >gi|300310817|ref|YP_003774909.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 256 Score = 494 bits (1273), Expect = e-141, Method: Compositional matrix adjust. Identities = 256/256 (100%), Positives = 256/256 (100%) Query: 17 MPSNLGRRLKAARPFLISVIAIVGGLVLWQLVSLTTSPLFLPSVSMTWAAALELISDGTL 76 MPSNLGRRLKAARPFLISVIAIVGGLVLWQLVSLTTSPLFLPSVSMTWAAALELISDGTL Sbjct: 1 MPSNLGRRLKAARPFLISVIAIVGGLVLWQLVSLTTSPLFLPSVSMTWAAALELISDGTL 60 Query: 77 QQSVLASSGRILAGWGAGVVIGVPLGIFMGRFETVRQLLDPYIEFFRFIPPIAFVTLAVI 136 QQSVLASSGRILAGWGAGVVIGVPLGIFMGRFETVRQLLDPYIEFFRFIPPIAFVTLAVI Sbjct: 61 QQSVLASSGRILAGWGAGVVIGVPLGIFMGRFETVRQLLDPYIEFFRFIPPIAFVTLAVI 120 Query: 137 WLGPGELSKIALIFYTTVFIVTLNTIAGVQAVNPLRLRAAASLGAGQWKILSTVILPSTV 196 WLGPGELSKIALIFYTTVFIVTLNTIAGVQAVNPLRLRAAASLGAGQWKILSTVILPSTV Sbjct: 121 WLGPGELSKIALIFYTTVFIVTLNTIAGVQAVNPLRLRAAASLGAGQWKILSTVILPSTV 180 Query: 197 PFMVTGARIAMGNSFLTVVSAEIVSAREGLGALIWTARNFSRTEWVFVGIIALGILGYLF 256 PFMVTGARIAMGNSFLTVVSAEIVSAREGLGALIWTARNFSRTEWVFVGIIALGILGYLF Sbjct: 181 PFMVTGARIAMGNSFLTVVSAEIVSAREGLGALIWTARNFSRTEWVFVGIIALGILGYLF 240 Query: 257 DRVLRVATRKLLARYL 272 DRVLRVATRKLLARYL Sbjct: 241 DRVLRVATRKLLARYL 256 >gi|300311644|ref|YP_003775736.1| taurine ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 293 Score = 128 bits (322), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 93/242 (38%), Positives = 146/242 (60%), Gaps = 6/242 (2%) Query: 33 ISVIAIVGGLVLWQLVSLT--TSPLFLPSVSMTWAAALELISDG----TLQQSVLASSGR 86 IS+ A + L LW L++ T LFLP+ + A + DG TL + V AS R Sbjct: 46 ISIAAGIVILALWWLIAQTGWVPHLFLPTPAEVLKVAQSIWEDGYANATLAEHVGASLLR 105 Query: 87 ILAGWGAGVVIGVPLGIFMGRFETVRQLLDPYIEFFRFIPPIAFVTLAVIWLGPGELSKI 146 IL V++G+P+G+ MG V+ +LD IEF+ +PP+A++ L +IWLG GE SKI Sbjct: 106 ILTAGVIAVLLGIPVGLLMGLNRWVKGVLDTPIEFYWPLPPLAYLPLMIIWLGIGEASKI 165 Query: 147 ALIFYTTVFIVTLNTIAGVQAVNPLRLRAAASLGAGQWKILSTVILPSTVPFMVTGARIA 206 L+ V L+ AGV+++ R+ AA SLGA +W++L+ V+LPS +P ++TG RIA Sbjct: 166 TLLTLAMFAPVVLSAQAGVRSLPQERVNAALSLGATRWQLLTEVVLPSALPEILTGIRIA 225 Query: 207 MGNSFLTVVSAEIVSAREGLGALIWTARNFSRTEWVFVGIIALGILGYLFDRVLRVATRK 266 +G + T+V+AE++++ G+G +I +A +F T+ VFVGI + + F +R+ R Sbjct: 226 LGVGWSTLVAAELIASNRGIGYMIMSASHFLATDAVFVGIALIATCAFAFSYGMRLLERA 285 Query: 267 LL 268 L+ Sbjct: 286 LV 287 >gi|300309716|ref|YP_003773808.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 273 Score = 106 bits (264), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 56/149 (37%), Positives = 93/149 (62%) Query: 109 ETVRQLLDPYIEFFRFIPPIAFVTLAVIWLGPGELSKIALIFYTTVFIVTLNTIAGVQAV 168 + + L++ ++ R IPPIA++ LA++W G G + LI F V +NTIAGV+ V Sbjct: 106 QRIYGLMNLTVQVIRPIPPIAYIPLAILWFGLGNPPALFLISLGAFFPVLMNTIAGVRQV 165 Query: 169 NPLRLRAAASLGAGQWKILSTVILPSTVPFMVTGARIAMGNSFLTVVSAEIVSAREGLGA 228 + + LRAA +LGA Q + V+LP+ VP++++G RI +G +F+ V+ AE+++ GLG Sbjct: 166 DSIYLRAARNLGASQSTLFLRVMLPAAVPYILSGVRIGIGTAFIVVIVAEMIAVSNGLGF 225 Query: 229 LIWTARNFSRTEWVFVGIIALGILGYLFD 257 I AR + ++ + G+I +G+LG D Sbjct: 226 RIMEAREYFWSDKIIAGMITIGLLGLAID 254 >gi|300310541|ref|YP_003774633.1| nitrate transporter permease [Herbaspirillum seropedicae SmR1] Length = 307 Score = 102 bits (255), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 58/198 (29%), Positives = 110/198 (55%), Gaps = 7/198 (3%) Query: 45 WQLVSLTTSPLFLPSVSMTWAAAL-------ELISDGTLQQSVLASSGRILAGWGAGVVI 97 WQ+++L TS P V++ A + +D + +VLAS R+ G+G ++ Sbjct: 71 WQIIALKTSSFPTPWVTLKEAGVMFADPFYRNSPNDQGIGWNVLASLQRVGTGFGLAALV 130 Query: 98 GVPLGIFMGRFETVRQLLDPYIEFFRFIPPIAFVTLAVIWLGPGELSKIALIFYTTVFIV 157 G+PLG +GR E + ++ P I R + P+A++ + ++ + I IF +++ + Sbjct: 131 GIPLGFAIGRVEFLARMFGPIISLLRPVSPLAWLPIGLLVFKSANPAAIWSIFICSIWPM 190 Query: 158 TLNTIAGVQAVNPLRLRAAASLGAGQWKILSTVILPSTVPFMVTGARIAMGNSFLTVVSA 217 +NT GVQ V + A L +WK+L+ ++ PS +P+M+TG R+++G ++L +V+A Sbjct: 191 IINTAVGVQRVPQDYMNVARVLNLSEWKVLTKILFPSVLPYMLTGVRLSIGTAWLVIVAA 250 Query: 218 EIVSAREGLGALIWTARN 235 E+++ G+G +W N Sbjct: 251 EMLTGGVGIGFWVWDEWN 268 >gi|300310979|ref|YP_003775071.1| alkanesulfonates ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 279 Score = 101 bits (252), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 86/269 (31%), Positives = 132/269 (49%), Gaps = 9/269 (3%) Query: 5 TQTATPTAQESAMPSNLGRRLKAARPFLISVIAIVG------GLVLWQLVSLT--TSPLF 56 T + P A A P + KAAR A +G LV W++ + S Sbjct: 2 TSASNPVAGRVAGPQEQAKP-KAARKSFQPSHAWIGWLLPLLLLVWWEVAAQAGWLSSRI 60 Query: 57 LPSVSMTWAAALELISDGTLQQSVLASSGRILAGWGAGVVIGVPLGIFMGRFETVRQLLD 116 LP AA EL + G L + + SSGR +G+ G +G+ LG+ G + LLD Sbjct: 61 LPEPLAVLKAAWELSASGELWRHLAVSSGRAASGFAVGAGLGLILGLLSGSLRSAELLLD 120 Query: 117 PYIEFFRFIPPIAFVTLAVIWLGPGELSKIALIFYTTVFIVTLNTIAGVQAVNPLRLRAA 176 ++ R IP +A + L ++W G E +K+ L+ F V LNT G+++V+ + A Sbjct: 121 TTLQMVRNIPALALIPLVILWFGIDETAKLFLVSVGVFFPVYLNTFHGIRSVDQGLIEMA 180 Query: 177 ASLGAGQWKILSTVILPSTVPFMVTGARIAMGNSFLTVVSAEIVSAREGLGALIWTARNF 236 S G W + VILP +P ++ G R A+G ++ ++ AE +SA+ G+G + AR F Sbjct: 181 KSYGLSGWPLYRDVILPGALPAILVGLRFALGLVWVLLIVAETISAQAGIGYMTMNAREF 240 Query: 237 SRTEWVFVGIIALGILGYLFDRVLRVATR 265 +T+ V VGI+ +LG L D R R Sbjct: 241 LQTDVVLVGILLYALLGKLADTAARWLER 269 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.326 0.139 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 774,708 Number of extensions: 31177 Number of successful extensions: 218 Number of sequences better than 1.0e-08: 18 Number of HSP's gapped: 211 Number of HSP's successfully gapped: 18 Length of query: 272 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 188 Effective length of database: 1,222,130 Effective search space: 229760440 Effective search space used: 229760440 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 130 (54.7 bits)