BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0019.p
         (178 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310811|ref|YP_003774903.1| 4-hydroxyphenylacetate 3-monoox...   328   1e-91
gi|300310670|ref|YP_003774762.1| 4-hydroxyphenylacetate 3-monoox...   149   9e-38
gi|300310013|ref|YP_003774105.1| flavin reductase domain, FMN-bi...    64   9e-12

>gi|300310811|ref|YP_003774903.1| 4-hydroxyphenylacetate
           3-monooxygenase small subunit [Herbaspirillum
           seropedicae SmR1]
          Length = 166

 Score =  328 bits (842), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 164/166 (98%), Positives = 164/166 (98%)

Query: 13  MKQDFRDAMARLSAAVNIITTDGPAGRAAMTVSAVSSVSDEPATVLVCINVSSAAHPILV 72
           MKQDFRDAMARLSAAVNIITTDGPAGRAAMTVSAVSSVSDEPATVLVCINVSSAAHPILV
Sbjct: 1   MKQDFRDAMARLSAAVNIITTDGPAGRAAMTVSAVSSVSDEPATVLVCINVSSAAHPILV 60

Query: 73  GNGRLCINILAAHHEDVARIIAGMTGLAAEERMAQVRWEMGDYGQPVLPDALAVLEGDIV 132
           GNGRLCINILAAHHEDVARIIAGMTGLAAEERMAQVRWEMGDYGQPVLPDALAVLEGDIV
Sbjct: 61  GNGRLCINILAAHHEDVARIIAGMTGLAAEERMAQVRWEMGDYGQPVLPDALAVLEGDIV 120

Query: 133 LQQQAGTHSVLFVEIRHIRLAAAQADGLAYFGRRFHRIAAGVPVAA 178
           LQQQ GTHSVLFVEIRHIRLAAAQADGLAYFGRRFHRIAAGV VAA
Sbjct: 121 LQQQTGTHSVLFVEIRHIRLAAAQADGLAYFGRRFHRIAAGVAVAA 166


>gi|300310670|ref|YP_003774762.1| 4-hydroxyphenylacetate
           3-monooxygenase small subunit [Herbaspirillum
           seropedicae SmR1]
          Length = 190

 Score =  149 bits (377), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 77/156 (49%), Positives = 102/156 (65%), Gaps = 2/156 (1%)

Query: 16  DFRDAMARLSAAVNIITTDGPAGRAAMTVSAVSSVSDEPATVLVCINVSSAAHPILVGNG 75
           +FR AMA L AAV+IITT+G  GR  +T SAV SV+D P T+LVCIN SSA H +   NG
Sbjct: 31  EFRHAMAHLPAAVSIITTNGEGGRCGITASAVCSVTDTPPTILVCINRSSAMHEVFRKNG 90

Query: 76  RLCINILAAHHEDVARIIAGMTGLAAEERMAQVRWEM-GDYGQPVLPDALAVLEGDIVLQ 134
           RLC+N+L+   E +A   +G T +  EER A   WE  G+  QPVL DAL  L+G I   
Sbjct: 91  RLCVNVLSDELEQLAMHFSGATKVPMEERFAWDIWEQPGELDQPVLADALVKLQGRIREF 150

Query: 135 QQAGTHSVLFVEIRHIRLAAAQADGLAYFGRRFHRI 170
           ++ GTHSV+FVE+  +++   + D L YF R FH++
Sbjct: 151 KEVGTHSVMFVELAEVKV-NEKKDSLIYFNRLFHKV 185


>gi|300310013|ref|YP_003774105.1| flavin reductase domain,
           FMN-binding protein [Herbaspirillum seropedicae SmR1]
          Length = 169

 Score = 63.5 bits (153), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 70/152 (46%), Gaps = 7/152 (4%)

Query: 17  FRDAMARLSAAVNIITTDGPAGRA-AMTVSAVSSVSDEPATVLVCINVSSAAHPILVGNG 75
           FR A+++ +  V +ITT    G    +T S+ +SVS +P  VL  +   + + P+  GN 
Sbjct: 18  FRQALSQFATGVTVITTRLADGTLLGLTASSFNSVSLDPPLVLWSLGSKANSMPVFSGNS 77

Query: 76  RLCINILAAHHEDVARIIAGMTGLAAEERMAQVRWEMGDYGQPVLPDALAVLEGDIVLQQ 135
              INIL+A    +A+  A       E R   V + +   GQP+L  A A  E     Q 
Sbjct: 78  HYVINILSADQAHLAQQFASKM----ENRFEGVAYTLSRTGQPILEGASAWFECHNRSQY 133

Query: 136 QAGTHSVLFVEIRHIRLAAAQADGLAYFGRRF 167
             G H +   E+ H   A  QA  L + G RF
Sbjct: 134 PEGDHVIFVGEVEHCE-ADPQA-ALVFHGGRF 163


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.134    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 574,273
Number of extensions: 23125
Number of successful extensions: 98
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 3
Length of query: 178
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 99
Effective length of database: 1,245,805
Effective search space: 123334695
Effective search space used: 123334695
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 127 (53.5 bits)