BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0014.p
         (521 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310807|ref|YP_003774899.1| NAD-dependent formate dehydroge...  1055   0.0  
gi|300311100|ref|YP_003775192.1| NADH dehydrogenase I subunit F ...   299   3e-82

>gi|300310807|ref|YP_003774899.1| NAD-dependent formate
           dehydrogenase beta subunit [Herbaspirillum seropedicae
           SmR1]
          Length = 520

 Score = 1055 bits (2729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 518/520 (99%), Positives = 519/520 (99%)

Query: 2   MSANDTVTVYVPRDSTALALGANEVAAAITAEAHKRGQSIRLVRNGSRGMFWLEPLVEVA 61
           MSANDTVTVYVPRDSTALALGANEVAAAITAEAHKRGQSI+LVRNGSRGMFWLEPLVEVA
Sbjct: 1   MSANDTVTVYVPRDSTALALGANEVAAAITAEAHKRGQSIKLVRNGSRGMFWLEPLVEVA 60

Query: 62  TAAGRVAYGPVAPEDVAGLFDAGLLQGGQHALHLGLTEEIAFLKNQERLTFARVGIIDPL 121
           TAAGRVAYGPVAPEDVAGLFDAGLLQGGQHALHLGLTEEIAFLKNQERLTFARVGIIDPL
Sbjct: 61  TAAGRVAYGPVAPEDVAGLFDAGLLQGGQHALHLGLTEEIAFLKNQERLTFARVGIIDPL 120

Query: 122 SLEDYLAHEGYVGLKNALAKTPEAIVQEMIASGLRGRGGAAFPTGIKWQTVLRAQSAQKY 181
           SLEDYLAHEGYVGLKNALAKTPEAIVQEMIASGLRGRGGAAFPTGIKWQTVLRAQSAQKY
Sbjct: 121 SLEDYLAHEGYVGLKNALAKTPEAIVQEMIASGLRGRGGAAFPTGIKWQTVLRAQSAQKY 180

Query: 182 VVCNADEGDSGTFSDRMIMEDDPFTLIEGMTIAGVAVGATEGYIYVRSEYPHSIATLEQA 241
           VVCNADEGDSGTFSDRMIMEDDPFTLIEGMTIAGVAVGATEGYIYVRSEYPHSIATLEQA
Sbjct: 181 VVCNADEGDSGTFSDRMIMEDDPFTLIEGMTIAGVAVGATEGYIYVRSEYPHSIATLEQA 240

Query: 242 IAIAHAQGYLGDDILGSDKSFRLEVRKGAGAYICGEETAMLESLEGKRGVVRAKPPLPAI 301
           IAIAHAQGYLGDDILGS KSFRLEVRKGAGAYICGEETAMLESLEGKRGVVRAKPPLPAI
Sbjct: 241 IAIAHAQGYLGDDILGSGKSFRLEVRKGAGAYICGEETAMLESLEGKRGVVRAKPPLPAI 300

Query: 302 EGLFGKPTVINNLISLASVPVILARGADFYKNFGVGRSHGTLPFQLAGNIRQGGLVEKAF 361
           EGLFGKPTVINNLISLASVPVILARGADFYKNFGVGRSHGTLPFQLAGNIRQGGLVEKAF
Sbjct: 301 EGLFGKPTVINNLISLASVPVILARGADFYKNFGVGRSHGTLPFQLAGNIRQGGLVEKAF 360

Query: 362 GLTLRQLLEDFGGGSASGRPIRAVQMGGPLGAYLPQSQFDTPLDYEAFAAIGAMIGHGGL 421
           GLTLRQLLEDFGGGSASGRPIRAVQMGGPLGAYLPQSQFDTPLDYEAFAAIGAMIGHGGL
Sbjct: 361 GLTLRQLLEDFGGGSASGRPIRAVQMGGPLGAYLPQSQFDTPLDYEAFAAIGAMIGHGGL 420

Query: 422 VAFDDSVDMARQARYAMQFCAVESCGKCTPCRIGSTRGVEVIDKIIANDDRAQQIHLLKS 481
           VAFDDSVDMARQARYAMQFCAVESCGKCTPCRIGSTRGVEVIDKIIANDDRAQQIHLLKS
Sbjct: 421 VAFDDSVDMARQARYAMQFCAVESCGKCTPCRIGSTRGVEVIDKIIANDDRAQQIHLLKS 480

Query: 482 LCDTMVNGSLCAMGGMTPFPVLSALNHFPEDFGAPSEQAA 521
           LCDTMVNGSLCAMGGMTPFPVLSALNHFPEDFGAPSEQAA
Sbjct: 481 LCDTMVNGSLCAMGGMTPFPVLSALNHFPEDFGAPSEQAA 520


>gi|300311100|ref|YP_003775192.1| NADH dehydrogenase I subunit F
           [Herbaspirillum seropedicae SmR1]
          Length = 431

 Score =  299 bits (766), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 167/394 (42%), Positives = 230/394 (58%), Gaps = 4/394 (1%)

Query: 123 LEDYLAHEGYVGLKNALAK--TPEAIVQEMIASGLRGRGGAAFPTGIKWQTVLRAQSAQK 180
           LEDY+   GY  LK  L +  TPE ++ ++ ASGLRGRGGA FPTG+KW  + R    QK
Sbjct: 24  LEDYVKRGGYESLKRILNEKITPEQVIADLKASGLRGRGGAGFPTGLKWSFMPRQFPGQK 83

Query: 181 YVVCNADEGDSGTFSDRMIMEDDPFTLIEGMTIAGVAVGATEGYIYVRSEYPHSIATLEQ 240
           Y+VCN DEG+ GTF DR I+  +P  LIEGM I G A+G T GY Y+  E   +    E+
Sbjct: 84  YLVCNTDEGEPGTFKDRDIIRYNPHALIEGMIIGGYAMGITVGYNYIHGEIFSAYERFEE 143

Query: 241 AIAIAHAQGYLGDDILGSDKSFRLEVRKGAGAYICGEETAMLESLEGKRGVVRAKPPLPA 300
           A+  A A G+LGD+ILG+  SF+L    G GAYICGEETA+LESLEGK+G  R KPP PA
Sbjct: 144 ALEEARAAGFLGDNILGTGFSFQLHAHHGYGAYICGEETALLESLEGKKGQPRFKPPFPA 203

Query: 301 IEGLFGKPTVINNLISLASVPVILARGADFYKNFGVGRSHGTLPFQLAGNIRQGGLVEKA 360
             GL+GKPT INN  + A+VP I   G   Y   G   + GT  F ++G++ + G  E  
Sbjct: 204 SFGLYGKPTTINNTETFAAVPFIFKVGPQAYAEMGKPNNGGTKIFSISGDVERPGNYEIP 263

Query: 361 FGLTLRQLLEDFGGGSASGRPIRAVQMGGPLGAYLP-QSQFDTPLDYEAFAAIGAMIGHG 419
            G     LLE   GG   G+ I+AV  GG     +      DT +DY+A A  G+M+G G
Sbjct: 264 LGTPFSTLLE-LAGGMRGGKKIKAVIPGGSSAPVIRGDVMMDTTMDYDAIAKAGSMLGSG 322

Query: 420 GLVAFDDSVDMARQARYAMQFCAVESCGKCTPCRIGSTRGVEVIDKIIANDDRAQQIHLL 479
            ++  D++  M +       F   ESCG+CTPCR G+     ++++I     + + + +L
Sbjct: 323 AVIVMDETRCMVKSLLRLSYFYYEESCGQCTPCREGTGWMYRMVERIENGHGKMEDLDVL 382

Query: 480 KSLCDTMVNGSLCAMGGMTPFPVLSALNHFPEDF 513
            S+ D +   ++CA+G     PV + + +F E+F
Sbjct: 383 NSVADNIQGRTICALGDAAAMPVRAFVKNFREEF 416


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,637,935
Number of extensions: 72083
Number of successful extensions: 243
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 240
Number of HSP's successfully gapped: 2
Length of query: 521
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 431
Effective length of database: 1,193,720
Effective search space: 514493320
Effective search space used: 514493320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)