BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0013.p
         (158 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310806|ref|YP_003774898.1| NAD-dependent formate dehydroge...   322   1e-89
gi|300311099|ref|YP_003775191.1| NADH dehydrogenase I subunit E ...    74   7e-15

>gi|300310806|ref|YP_003774898.1| NAD-dependent formate
           dehydrogenase subunit gamma [Herbaspirillum seropedicae
           SmR1]
          Length = 158

 Score =  322 bits (824), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 157/158 (99%), Positives = 157/158 (99%)

Query: 1   MKRQQVFDVAAVRGIIAERKEMAGAMLPILHGIQEKVGYIPADAVPMIAGELNVSRAEVH 60
           MKRQQVFDVAAVRGIIAERKEMAGAMLPILHGIQEKVGYIPADAVPMIAGELNVSRAEVH
Sbjct: 1   MKRQQVFDVAAVRGIIAERKEMAGAMLPILHGIQEKVGYIPADAVPMIAGELNVSRAEVH 60

Query: 61  GVISFYHFFRQEPAGRHVVQVCRAEACQARGSEALAEHAQNVLGCGFHDTSADGQFTLEP 120
           GVISFYHFFRQEPAGRHVVQVCRAEACQARG EALAEHAQNVLGCGFHDTSADGQFTLEP
Sbjct: 61  GVISFYHFFRQEPAGRHVVQVCRAEACQARGGEALAEHAQNVLGCGFHDTSADGQFTLEP 120

Query: 121 VYCLGQCAIGPNLTLDDELHARVDADKFKRLIQAKREA 158
           VYCLGQCAIGPNLTLDDELHARVDADKFKRLIQAKREA
Sbjct: 121 VYCLGQCAIGPNLTLDDELHARVDADKFKRLIQAKREA 158


>gi|300311099|ref|YP_003775191.1| NADH dehydrogenase I subunit E
           [Herbaspirillum seropedicae SmR1]
          Length = 159

 Score = 73.6 bits (179), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 67/131 (51%), Gaps = 1/131 (0%)

Query: 24  GAMLPILHGIQEKVGYIPADAVPMIAGELNVSRAEVHGVISFYHFFRQEPAGRHVVQVCR 83
            A++  L   Q + G++PA+    IA  + +    V  V +FY+ F   P G+H + VC 
Sbjct: 25  SAVMSALRIAQVEHGWLPAELQQEIADYIGMPAVAVQEVATFYNMFNTSPVGKHKITVCT 84

Query: 84  AEACQARGSEALAEHAQNVLGCGFHDTSADGQFTLEPVYCLGQCAIGPNLTLDD-ELHAR 142
              C   G E  A H +  LG  + +T+ADGQFTL    C+G C   P + +++ ++ + 
Sbjct: 85  NLPCLLSGGERAAHHLKQKLGIDYRETTADGQFTLMEGECMGACGDAPVMLVNNHQMCSW 144

Query: 143 VDADKFKRLIQ 153
           +  +K   L++
Sbjct: 145 MSNEKIDALLE 155


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 498,638
Number of extensions: 20082
Number of successful extensions: 78
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 2
Length of query: 158
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 80
Effective length of database: 1,250,540
Effective search space: 100043200
Effective search space used: 100043200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 127 (53.5 bits)