BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0009.p (277 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312969|ref|YP_003777061.1| nitrate/sulfonate/bicarbonate A... 555 e-159 gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate A... 286 1e-78 gi|300310818|ref|YP_003774910.1| nitrate/sulfonate/bicarbonate A... 181 4e-47 gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A... 181 4e-47 gi|300311841|ref|YP_003775933.1| nitrate/sulfonate/bicarbonate A... 177 1e-45 >gi|300312969|ref|YP_003777061.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 555 bits (1429), Expect = e-159, Method: Compositional matrix adjust. Identities = 269/269 (100%), Positives = 269/269 (100%) Query: 9 MTPALQFDNITCTFVSKDDRSQRYTAVANTDLAIAPGEFVSVVGPTGCGKSTLLNVGAGL 68 MTPALQFDNITCTFVSKDDRSQRYTAVANTDLAIAPGEFVSVVGPTGCGKSTLLNVGAGL Sbjct: 1 MTPALQFDNITCTFVSKDDRSQRYTAVANTDLAIAPGEFVSVVGPTGCGKSTLLNVGAGL 60 Query: 69 LQPSSGSVKVFGEELKGINRRAGYMFQAEALMPWRSALQNVIAGLQYRGHEEKAAAELGE 128 LQPSSGSVKVFGEELKGINRRAGYMFQAEALMPWRSALQNVIAGLQYRGHEEKAAAELGE Sbjct: 61 LQPSSGSVKVFGEELKGINRRAGYMFQAEALMPWRSALQNVIAGLQYRGHEEKAAAELGE 120 Query: 129 QWLARVGLQGFGDRYPHQLSGGMRKRVALAQTLILDPDIILMDEPFSALDIQTRQLMENE 188 QWLARVGLQGFGDRYPHQLSGGMRKRVALAQTLILDPDIILMDEPFSALDIQTRQLMENE Sbjct: 121 QWLARVGLQGFGDRYPHQLSGGMRKRVALAQTLILDPDIILMDEPFSALDIQTRQLMENE 180 Query: 189 VLDLWNAKKKAVLFITHDLDEAIAMSDRVIVLAAGPGTHPIGEFRIDLPRPRDVAEIRMH 248 VLDLWNAKKKAVLFITHDLDEAIAMSDRVIVLAAGPGTHPIGEFRIDLPRPRDVAEIRMH Sbjct: 181 VLDLWNAKKKAVLFITHDLDEAIAMSDRVIVLAAGPGTHPIGEFRIDLPRPRDVAEIRMH 240 Query: 249 PRFVELHQQIWDVLRDEVLKGYQQQKRAA 277 PRFVELHQQIWDVLRDEVLKGYQQQKRAA Sbjct: 241 PRFVELHQQIWDVLRDEVLKGYQQQKRAA 269 >gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 275 Score = 286 bits (732), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 136/257 (52%), Positives = 190/257 (73%), Gaps = 3/257 (1%) Query: 10 TPALQFDNITCTFVSKDDRSQRYTAVANTDLAIAPGEFVSVVGPTGCGKSTLLNVGAGLL 69 TPA++ N++C F++ D R+ A+ + +++A GEFV+VVGPTGCGKST L++ GLL Sbjct: 19 TPAIELRNVSCRFITADGRAT--VALRDFSMSVARGEFVAVVGPTGCGKSTTLSLITGLL 76 Query: 70 QPSSGSVKVFGEELKGINRRAGYMFQAEALMPWRSALQNVIAGLQYRGHEEKAAAELGEQ 129 +P+ G V+V G+ + GI+ R G++FQ +A+ PWRS +NV AG +RG + A L ++ Sbjct: 77 KPTLGEVRVMGQPVNGIDPRIGFVFQNDAVFPWRSVRENVAAGPLFRGQPKAQAHALADE 136 Query: 130 WLARVGLQGFGDRYPHQLSGGMRKRVALAQTLILDPDIILMDEPFSALDIQTRQLMENEV 189 W+ RVGL FGD YPHQLSGGMRKRVALAQT I P+I+LMDEPFSALD+QTR LM++E+ Sbjct: 137 WIRRVGLDKFGDHYPHQLSGGMRKRVALAQTFINSPEILLMDEPFSALDMQTRTLMQDEL 196 Query: 190 LDLWNAKKKAVLFITHDLDEAIAMSDRVIVLAAGPGTHPIGEFRIDLPRPRDVAEIRMHP 249 L LW+A +V+F+THDL+EAIA++D+V VL A P T + IDLPRPR + E+R Sbjct: 197 LRLWSAHSGSVVFVTHDLEEAIALADKVYVLTARPATLK-SVYPIDLPRPRVMEEVRYEQ 255 Query: 250 RFVELHQQIWDVLRDEV 266 RF+++ ++IW LR+EV Sbjct: 256 RFIDISRRIWADLREEV 272 >gi|300310818|ref|YP_003774910.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 265 Score = 181 bits (460), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 100/240 (41%), Positives = 150/240 (62%), Gaps = 6/240 (2%) Query: 35 VANTDLAIAPGEFVSVVGPTGCGKSTLLNVGAGLLQPSSGSVKVFGEELKGINRRAGYMF 94 +A DL I GEFV ++GP+GCGKSTLLN AG Q SG + V G+ +KG G +F Sbjct: 22 MAGIDLDIRAGEFVCLLGPSGCGKSTLLNAIAGF-QDVSGEISVDGKRVKGPGLDRGVVF 80 Query: 95 QA-EALMPWRSALQNVIAGLQYRGHEEKAAAELGEQWLARVGLQGFGDRYPHQLSGGMRK 153 Q+ EAL PW S +NV GL+ RG E++++ VGL+ D++P +LSGGMR+ Sbjct: 81 QSSEALFPWLSVRENVEYGLKLRGVASAERRAAAERYVSLVGLKHAIDKFPAELSGGMRQ 140 Query: 154 RVALAQTLILDPDIILMDEPFSALDIQTRQLMENEVLDLWNAKKKAVLFITHDLDEAIAM 213 R +A+ L+ +P ++LMDEPF ALD QTR+++++E+ +W + ++F+THD+ EAI + Sbjct: 141 RAQIARVLVNEPSVVLMDEPFGALDAQTREVLQSELDRIWKSTGCTIVFVTHDIWEAILL 200 Query: 214 SDRVIVLAAGPGTHPIGEFRIDLPRPRDVAEIRMHPRFVELHQQIWDVLRDEVLKGYQQQ 273 +DRV+ + AGP H + LP PRD A+ P + L+ +I D + EV + + Q Sbjct: 201 ADRVVTMTAGPRAHIKTIEEVHLPHPRDPAD----PACMALYARIRDDIGAEVTRVLRAQ 256 >gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 181 bits (460), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 106/272 (38%), Positives = 164/272 (60%), Gaps = 16/272 (5%) Query: 10 TPALQFDNITCTFVSKDDRSQRYTAVANTDLAIAPGEFVSVVGPTGCGKSTLLNVGAGLL 69 +P ++ + F DDR A+ + +L I G+FV ++GP+GCGKSTLLN AG Sbjct: 7 SPRIRIQGVHKVF-KTDDRE--VVALKDINLDIPDGQFVCLLGPSGCGKSTLLNAIAGFA 63 Query: 70 QPSSGSV----KVFGEELKGINRRAGYMFQAEALMPWRSALQNVIAGLQYRGHEEKAAAE 125 PSSG + KV E G +R G +FQ AL PW + QNV GL+ +G + + Sbjct: 64 LPSSGQILTDDKVVSE--PGPDR--GMVFQEYALFPWMTVEQNVAFGLEIKGTPKAEIHQ 119 Query: 126 LGEQWLARVGLQGFGDRYPHQLSGGMRKRVALAQTLILDPDIILMDEPFSALDIQTRQLM 185 Q L ++GL F R+P LSGGMR+RVA+A+ L LD I+LMDEPF ALD TR+ + Sbjct: 120 RVTQLLDKLGLIDFRTRFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNL 179 Query: 186 ENEVLDLWNAKKKAVLFITHDLDEAIAMSDRVIVLAAGPGTHPIGEFRIDLPRPRDVAEI 245 ++E+L +W+ +K ++F+TH ++EAI ++DR++V+ PGT + ++LPR RD A+ Sbjct: 180 QDELLRIWDEFRKTIVFVTHSIEEAIYLADRIVVMTYRPGTVK-RDMLVNLPRLRDPAD- 237 Query: 246 RMHPRFVELHQQIWDVLRDEVLKGYQQQKRAA 277 P F L +++ ++ +E + + + +AA Sbjct: 238 ---PEFNALKRELGQLVMEEQQRHHNAEMKAA 266 >gi|300311841|ref|YP_003775933.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 263 Score = 177 bits (448), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 88/217 (40%), Positives = 139/217 (64%), Gaps = 5/217 (2%) Query: 11 PALQFDNITCTFVSKDDRSQRYTAVANTDLAIAPGEFVSVVGPTGCGKSTLLNVGAGLLQ 70 P L+ D +T + + D TA + + PG+ ++GP+GCGKSTLL G LQ Sbjct: 16 PLLEIDRVTLQYKTTDSL---VTATQSVSFNVHPGDRYILLGPSGCGKSTLLKAIGGYLQ 72 Query: 71 PSSGSVKVFGEELKGINRRAGYMFQA-EALMPWRSALQNVIAGLQYRGH-EEKAAAELGE 128 P+SG++++ G E+ +FQ + L+PW++ QNV L G + +AAAE E Sbjct: 73 PTSGAIRLKGREVHEPGPDRMMVFQEFDQLLPWKTVRQNVEFALHASGRLQGRAAAERAE 132 Query: 129 QWLARVGLQGFGDRYPHQLSGGMRKRVALAQTLILDPDIILMDEPFSALDIQTRQLMENE 188 ++++VGL F D YPH LSGGM++RV++A+ + ++PD++LMDEPF+ALD TR+ M++E Sbjct: 133 YYISKVGLAKFIDSYPHMLSGGMKQRVSIARGMAMEPDVLLMDEPFAALDALTRRKMQDE 192 Query: 189 VLDLWNAKKKAVLFITHDLDEAIAMSDRVIVLAAGPG 225 +L LW+ + VLF+TH ++EAI + R+++L PG Sbjct: 193 LLRLWDDTQFTVLFVTHSIEEAIRVGTRILLLTPHPG 229 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.137 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 910,544 Number of extensions: 39368 Number of successful extensions: 500 Number of sequences better than 1.0e-08: 128 Number of HSP's gapped: 329 Number of HSP's successfully gapped: 139 Length of query: 277 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 193 Effective length of database: 1,222,130 Effective search space: 235871090 Effective search space used: 235871090 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)