BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0002.p
         (686 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313394|ref|YP_003777486.1| glucosidase [Herbaspirillum ser...   120   2e-28

>gi|300313394|ref|YP_003777486.1| glucosidase [Herbaspirillum
           seropedicae SmR1]
          Length = 803

 Score =  120 bits (302), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/390 (26%), Positives = 156/390 (40%), Gaps = 34/390 (8%)

Query: 300 TSFGKRLFWDWRWNEQRYPGHAEWLAQLKQQGVRFLGYVNPYLCVDGTLYREAHAKGFLA 359
           TS G + +  + WN +++P    ++       +     + P L  D   + +A   G L 
Sbjct: 316 TSIGPKRY-VFHWNTEKFPDPHGFVRSYLDASIHLCANIKPCLLRDHPQFEQARQAGLLI 374

Query: 360 TRADGSDYLVDFGEFDCGVVDFTQPEASRWFEQRVIGAEMLAQGLDG----------WMA 409
             + G    V F +     +DFT P    W+   V  A +L  G+            W  
Sbjct: 375 CDSQGEPAWVQFWDEVGAYLDFTNPATLDWWRANVKQA-LLDYGVSATWNDNNEFEVWTG 433

Query: 410 D-----FGEYLPTDVTLANGQPAMLMHNAWPTLWAEVNARAIADAGRTGDAVFFMRAGYT 464
           D     FG+  P  V  A     MLM  A        + +A  +A          R+G  
Sbjct: 434 DAYAHGFGQQYP--VRQAKVLQTMLMMQA--------SRQAQLEAAPQRRPFLVSRSGGA 483

Query: 465 GVQAHCPLLWAGDQSVDFSRHDGLQTVICGALSSGFLGNAYHHSDIGGYTSLFGNRRTPE 524
           G+Q +    W+GD   +++  + L+  +   L     G +    DIGG++   G    PE
Sbjct: 484 GMQRYVQT-WSGD---NYTSWETLRYNLKMGLGLALSGVSNIGHDIGGFS---GPAPAPE 536

Query: 525 LFQRWAEMAAFTPMMRTHEGNRPDENFQFWQDPAVLAHFARMTRLFVGLKPYVQELVEQA 584
           L  RW     F P    H  N      + W  P V A  A + +L     PY+ EL+ Q+
Sbjct: 537 LLVRWVAFGVFMPRFSIHSWNDDKTVNEPWMYPEVTAQIAALIKLRYRFIPYLYELLWQS 596

Query: 585 ATRGTPLQRPLFLHYEQDRATYTLQDQYLYGPDLLVAPVHAAQASRWSAYLPLGDDWLHL 644
                P+ RP F  +  DR      D  + G  +LVAPV     +    YLP G  W+  
Sbjct: 597 TQDYQPVLRPTFAEFPHDRRCLDECDDMMLGSAMLVAPVVEQGQTERRVYLPSGARWVSY 656

Query: 645 WSGQRHAGGQRVEVEAPLGQPPVFVRAASA 674
           WSG+R+ GGQ + + AP  QP + +R  + 
Sbjct: 657 WSGERYEGGQEISLPAPWDQPVMLLREGAV 686


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,484,268
Number of extensions: 113856
Number of successful extensions: 277
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 276
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 594
Effective length of database: 1,184,250
Effective search space: 703444500
Effective search space used: 703444500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 134 (56.2 bits)