BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0333.p
         (104 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310527|ref|YP_003774619.1| transmembrane protein [Herbaspi...   208   6e-56
gi|300313674|ref|YP_003777766.1| hypothetical protein Hsero_4391...    86   9e-19

>gi|300310527|ref|YP_003774619.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 144

 Score =  208 bits (530), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 104/104 (100%), Positives = 104/104 (100%)

Query: 1   MQANKFKTVRTDVQSLLQQAQDMFAEAANATGKKADDLRASAQELLEQALNTAQDAQAAV 60
           MQANKFKTVRTDVQSLLQQAQDMFAEAANATGKKADDLRASAQELLEQALNTAQDAQAAV
Sbjct: 41  MQANKFKTVRTDVQSLLQQAQDMFAEAANATGKKADDLRASAQELLEQALNTAQDAQAAV 100

Query: 61  VDTGRQIVTTTDDYVQSNPWRAIAIGTGIGLLVGLAVGRCADRY 104
           VDTGRQIVTTTDDYVQSNPWRAIAIGTGIGLLVGLAVGRCADRY
Sbjct: 101 VDTGRQIVTTTDDYVQSNPWRAIAIGTGIGLLVGLAVGRCADRY 144


>gi|300313674|ref|YP_003777766.1| hypothetical protein Hsero_4391
           [Herbaspirillum seropedicae SmR1]
          Length = 102

 Score = 85.5 bits (210), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 55/99 (55%), Positives = 72/99 (72%)

Query: 2   QANKFKTVRTDVQSLLQQAQDMFAEAANATGKKADDLRASAQELLEQALNTAQDAQAAVV 61
           Q+   KTVR D+++L++ AQ +FAEAA ATG+KAD+LRA    LLE A   AQ AQAA +
Sbjct: 3   QSPALKTVRNDMKTLVKDAQALFAEAAAATGEKADELRARGLTLLEAAAEAAQSAQAAAI 62

Query: 62  DTGRQIVTTTDDYVQSNPWRAIAIGTGIGLLVGLAVGRC 100
           + G+++   TDDYV  NPWRA+AI  G+GLLVGL +GR 
Sbjct: 63  EKGKEVAAKTDDYVHENPWRAVAISAGLGLLVGLVIGRS 101


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.127    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 281,543
Number of extensions: 10038
Number of successful extensions: 76
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 2
Length of query: 104
Length of database: 1,619,870
Length adjustment: 71
Effective length of query: 33
Effective length of database: 1,283,685
Effective search space: 42361605
Effective search space used: 42361605
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 123 (52.0 bits)