BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0320.p
         (432 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310540|ref|YP_003774632.1| nitrate transporter periplasmic...   848   0.0  

>gi|300310540|ref|YP_003774632.1| nitrate transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 414

 Score =  848 bits (2191), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/413 (99%), Positives = 412/413 (99%)

Query: 20  ARGEQVDGKRRTLIQGAGLAATGALGLAGRGARAAGSDKPEKEEVKIGFIPLTDCASVVM 79
           ARGEQVDGKRRTLIQGAGLAATGALGLAGRGA AAGSDKPEKEEVKIGFIPLTDCASVVM
Sbjct: 2   ARGEQVDGKRRTLIQGAGLAATGALGLAGRGAWAAGSDKPEKEEVKIGFIPLTDCASVVM 61

Query: 80  ASVLGLDKKYGIKIIPSKEASWAGVRDKLTNGELDAAHVLYGLIYGVQLGIGGQKKDMAV 139
           ASVLGLDKKYGIKIIPSKEASWAGVRDKLTNGELDAAHVLYGLIYGVQLGIGGQKKDMAV
Sbjct: 62  ASVLGLDKKYGIKIIPSKEASWAGVRDKLTNGELDAAHVLYGLIYGVQLGIGGQKKDMAV 121

Query: 140 LMGLNHNGQAITLSRKLADKGAVDGASLYKLMQTDKREYTFAQTFPTGTHAMWLYYWLAA 199
           LMGLNHNGQAITLSRKLADKGAVDGASLYKLMQTDKREYTFAQTFPTGTHAMWLYYWLAA
Sbjct: 122 LMGLNHNGQAITLSRKLADKGAVDGASLYKLMQTDKREYTFAQTFPTGTHAMWLYYWLAA 181

Query: 200 NGINPMKDAKVITVPPPQMVANMRVGNMDGFCVGEPWGHRAIVDGVGITATTTQDIWKDH 259
           NGINPMKDAKVITVPPPQMVANMRVGNMDGFCVGEPWGHRAIVDGVGITATTTQDIWKDH
Sbjct: 182 NGINPMKDAKVITVPPPQMVANMRVGNMDGFCVGEPWGHRAIVDGVGITATTTQDIWKDH 241

Query: 260 PEKVLGSSLEFVKKYPNTCRAMMAAILEASKWIDASLTNKNRMAEVIADKSYVNTSKDVI 319
           PEKVLGSSLEFVKKYPNTCRAMMAAILEASKWIDASLTNKNRMAEVIADKSYVNTSKDVI
Sbjct: 242 PEKVLGSSLEFVKKYPNTCRAMMAAILEASKWIDASLTNKNRMAEVIADKSYVNTSKDVI 301

Query: 320 DQRILGRYQNGLGKTWDDPNYMKFYEDGQVNFPFLSDGMWFMTQHRRWGLLKSDPDYLAV 379
           DQRILGRYQNGLGKTWDDPNYMKFYEDGQVNFPFLSDGMWFMTQHRRWGLLKSDPDYLAV
Sbjct: 302 DQRILGRYQNGLGKTWDDPNYMKFYEDGQVNFPFLSDGMWFMTQHRRWGLLKSDPDYLAV 361

Query: 380 AKAVNQIDLYKQAAAMTGTPLPKDSMRSSRLMDGVVWDGKNPAAYAQSFKIKV 432
           AKAVNQIDLYKQAAAMTGTPLPKDSMRSSRLMDGVVWDGKNPAAYAQSFKIKV
Sbjct: 362 AKAVNQIDLYKQAAAMTGTPLPKDSMRSSRLMDGVVWDGKNPAAYAQSFKIKV 414


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.134    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,336,680
Number of extensions: 54032
Number of successful extensions: 142
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 344
Effective length of database: 1,203,190
Effective search space: 413897360
Effective search space used: 413897360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)