BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0318.p (272 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310542|ref|YP_003774634.1| nitrate transporter ATPase [Her... 556 e-160 gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A... 207 7e-55 gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbasp... 187 1e-48 gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase ... 181 4e-47 gi|300310818|ref|YP_003774910.1| nitrate/sulfonate/bicarbonate A... 179 3e-46 >gi|300310542|ref|YP_003774634.1| nitrate transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 272 Score = 556 bits (1432), Expect = e-160, Method: Compositional matrix adjust. Identities = 271/272 (99%), Positives = 272/272 (100%) Query: 1 MNMDNINGKFIDIHGVEMLFHTKKGVFHALREINLTVAKGEFVTLIGHSGCGKSTLLNLI 60 MNMDNINGKFIDIHGVEMLFHTKKGVFHALREINLTVAKGEFVTLIGHSGCGKSTLLNLI Sbjct: 1 MNMDNINGKFIDIHGVEMLFHTKKGVFHALREINLTVAKGEFVTLIGHSGCGKSTLLNLI 60 Query: 61 AGLLKPSEGVLLCANREIGGPAPERAVVFQNHSLLPWLTCYENIYLGVERVFGATENRTQ 120 AGLLKPSEGVLLCANREIGGPAPERAVVFQNHSLLPWL+CYENIYLGVERVFGATENRTQ Sbjct: 61 AGLLKPSEGVLLCANREIGGPAPERAVVFQNHSLLPWLSCYENIYLGVERVFGATENRTQ 120 Query: 121 LRDRTRAALALVGLSAAENKRPNEISGGMKQRVGIARALAMEPKVLLMDEPFGALDALTR 180 LRDRTRAALALVGLSAAENKRPNEISGGMKQRVGIARALAMEPKVLLMDEPFGALDALTR Sbjct: 121 LRDRTRAALALVGLSAAENKRPNEISGGMKQRVGIARALAMEPKVLLMDEPFGALDALTR 180 Query: 181 AHLQDELLKIVAKTDSTVVMVTHDVDEAVLLSDRIVMMTNGPAATIGEVLEVKLARPRDR 240 AHLQDELLKIVAKTDSTVVMVTHDVDEAVLLSDRIVMMTNGPAATIGEVLEVKLARPRDR Sbjct: 181 AHLQDELLKIVAKTDSTVVMVTHDVDEAVLLSDRIVMMTNGPAATIGEVLEVKLARPRDR 240 Query: 241 VVLAQDPEYGQYRTAVLEFLYRKQAHPAREAA 272 VVLAQDPEYGQYRTAVLEFLYRKQAHPAREAA Sbjct: 241 VVLAQDPEYGQYRTAVLEFLYRKQAHPAREAA 272 >gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 207 bits (527), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 113/264 (42%), Positives = 163/264 (61%), Gaps = 9/264 (3%) Query: 1 MNMDNINGKFIDIHGVEMLFHTKKGVFHALREINLTVAKGEFVTLIGHSGCGKSTLLNLI 60 MN N + + I I GV +F T AL++INL + G+FV L+G SGCGKSTLLN I Sbjct: 1 MNQTNASPR-IRIQGVHKVFKTDDREVVALKDINLDIPDGQFVCLLGPSGCGKSTLLNAI 59 Query: 61 AGLLKPSEGVLLCANREIGGPAPERAVVFQNHSLLPWLTCYENIYLGVERVFGATENRTQ 120 AG PS G +L ++ + P P+R +VFQ ++L PW+T +N+ G+E + G + + Sbjct: 60 AGFALPSSGQILTDDKVVSEPGPDRGMVFQEYALFPWMTVEQNVAFGLE-IKGTP--KAE 116 Query: 121 LRDRTRAALALVGLSAAENKRPNEISGGMKQRVGIARALAMEPKVLLMDEPFGALDALTR 180 + R L +GL + P ++SGGM+QRV IAR LA++ ++LMDEPFGALDALTR Sbjct: 117 IHQRVTQLLDKLGLIDFRTRFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTR 176 Query: 181 AHLQDELLKIVAKTDSTVVMVTHDVDEAVLLSDRIVMMTNGPAATIGEVLEVKLARPRDR 240 +LQDELL+I + T+V VTH ++EA+ L+DRIV+MT P T+ + V L R RD Sbjct: 177 RNLQDELLRIWDEFRKTIVFVTHSIEEAIYLADRIVVMTYRP-GTVKRDMLVNLPRLRD- 234 Query: 241 VVLAQDPEYGQYRTAVLEFLYRKQ 264 DPE+ + + + + +Q Sbjct: 235 ---PADPEFNALKRELGQLVMEEQ 255 >gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 187 bits (474), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 95/204 (46%), Positives = 132/204 (64%), Gaps = 3/204 (1%) Query: 25 GVFHALREINLTVAKGEFVTLIGHSGCGKSTLLNLIAGLLKPSEGVLLCANREIGGPAPE 84 G H + E +A GE V L+G SGCGKSTLL++ AGL KPS G + + I GP PE Sbjct: 13 GDLHVIEEFTREIASGELVALVGPSGCGKSTLLHMAAGLEKPSSGSVAGDGQTIRGPHPE 72 Query: 85 RAVVFQNHSLLPWLTCYENIYLGVERVFGATENRTQLRDRTRAALALVGLSAAENKRPNE 144 R ++FQ ++L PWLT +N+ L +E F + + + + ++ R L V L E+ P++ Sbjct: 73 RTLMFQENALYPWLTLQQNVALALE--FQSVDKK-KAAEQARVWLENVKLKGFEHYYPHQ 129 Query: 145 ISGGMKQRVGIARALAMEPKVLLMDEPFGALDALTRAHLQDELLKIVAKTDSTVVMVTHD 204 +SGGM+QR +ARA +PK LL+DEPFGALDALTR LQD L ++ + TVV+VTHD Sbjct: 130 VSGGMRQRAALARAFISQPKALLLDEPFGALDALTRMTLQDALRDLIRQQGPTVVLVTHD 189 Query: 205 VDEAVLLSDRIVMMTNGPAATIGE 228 VDEA+ L+DRI + + PA + E Sbjct: 190 VDEALFLADRIFVFSPRPAKVLKE 213 >gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 181 bits (460), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 90/199 (45%), Positives = 128/199 (64%), Gaps = 3/199 (1%) Query: 28 HALREINLTVAKGEFVTLIGHSGCGKSTLLNLIAGLLKPSEGVLLCANREIGGPAPERAV 87 HAL ++L + G FV +G SGCGKSTLLN +AG L SEG + + + GP ER V Sbjct: 20 HALDRVSLDIPNGGFVVALGTSGCGKSTLLNAMAGFLPLSEGRISLDGQPVSGPGAERGV 79 Query: 88 VFQNHSLLPWLTCYENIYLGVERVFGATENRTQLRDRTRAALALVGLSAAENKRPNEISG 147 VFQ SLLPW + +N+ LG++ A +++ R+R + L LVGL P E+SG Sbjct: 80 VFQKDSLLPWKSVQDNVALGLKF---AGVSKSDSRERAQELLRLVGLQDFARAAPYELSG 136 Query: 148 GMKQRVGIARALAMEPKVLLMDEPFGALDALTRAHLQDELLKIVAKTDSTVVMVTHDVDE 207 GM+QRVG+ARALA PK+LLMDEPFGALD++TR +Q+ L+ + A+T V +TH ++E Sbjct: 137 GMRQRVGLARALAPNPKILLMDEPFGALDSMTREQMQELLVSVWARTGKQVFFITHSIEE 196 Query: 208 AVLLSDRIVMMTNGPAATI 226 A+ L +++M+ P + Sbjct: 197 ALFLGTEVIVMSPRPGRIV 215 >gi|300310818|ref|YP_003774910.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 265 Score = 179 bits (453), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 103/208 (49%), Positives = 131/208 (62%), Gaps = 5/208 (2%) Query: 33 INLTVAKGEFVTLIGHSGCGKSTLLNLIAGLLKPSEGVLLCANREIGGPAPERAVVFQN- 91 I+L + GEFV L+G SGCGKSTLLN IAG S G + + + GP +R VVFQ+ Sbjct: 25 IDLDIRAGEFVCLLGPSGCGKSTLLNAIAGFQDVS-GEISVDGKRVKGPGLDRGVVFQSS 83 Query: 92 HSLLPWLTCYENIYLGVERVFGATENRTQLRDRTRAALALVGLSAAENKRPNEISGGMKQ 151 +L PWL+ EN+ G+ ++ G + ++LVGL A +K P E+SGGM+Q Sbjct: 84 EALFPWLSVRENVEYGL-KLRGVASAERRAA--AERYVSLVGLKHAIDKFPAELSGGMRQ 140 Query: 152 RVGIARALAMEPKVLLMDEPFGALDALTRAHLQDELLKIVAKTDSTVVMVTHDVDEAVLL 211 R IAR L EP V+LMDEPFGALDA TR LQ EL +I T T+V VTHD+ EA+LL Sbjct: 141 RAQIARVLVNEPSVVLMDEPFGALDAQTREVLQSELDRIWKSTGCTIVFVTHDIWEAILL 200 Query: 212 SDRIVMMTNGPAATIGEVLEVKLARPRD 239 +DR+V MT GP A I + EV L PRD Sbjct: 201 ADRVVTMTAGPRAHIKTIEEVHLPHPRD 228 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.137 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 819,774 Number of extensions: 32682 Number of successful extensions: 519 Number of sequences better than 1.0e-08: 130 Number of HSP's gapped: 310 Number of HSP's successfully gapped: 141 Length of query: 272 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 188 Effective length of database: 1,222,130 Effective search space: 229760440 Effective search space used: 229760440 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)