BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0314.p
         (394 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310546|ref|YP_003774638.1| hypothetical protein Hsero_1213...   806   0.0  

>gi|300310546|ref|YP_003774638.1| hypothetical protein Hsero_1213
           [Herbaspirillum seropedicae SmR1]
          Length = 423

 Score =  806 bits (2082), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/394 (98%), Positives = 391/394 (99%)

Query: 1   MAENTLREFTRCNSSFFSALASDTATQQAIRPVERKDGIAWIKVKDRKNAPANQVDFKPA 60
           MAENTLREFTRCNSSFFSALASDTATQQAI PVERKDGIAWIKVKDRKNAPAN VDF PA
Sbjct: 30  MAENTLREFTRCNSSFFSALASDTATQQAIGPVERKDGIAWIKVKDRKNAPANHVDFNPA 89

Query: 61  ITVGGLKLLGYFDEISDMEELGHYYYWGFVVEGSVENVIGNLRPLVSDADRLRGSGSDYA 120
           ITVGGLKLLGYFDEISDMEELGHYYYWGFVVEGSVENVIGNLRPLVSDADRLRGSGSDYA
Sbjct: 90  ITVGGLKLLGYFDEISDMEELGHYYYWGFVVEGSVENVIGNLRPLVSDADRLRGSGSDYA 149

Query: 121 RTELRSGNSGWRAVHTGSGTVPTANTIERAFIVEPMENNKNATRVSCSLQGSVSAQVLKT 180
           RTELRSGNSGWRAVHTGSGTVPTANTIERAFIVEPMENNKNATRVSCSLQGSVSAQVLKT
Sbjct: 150 RTELRSGNSGWRAVHTGSGTVPTANTIERAFIVEPMENNKNATRVSCSLQGSVSAQVLKT 209

Query: 181 ERPDLGPDELPAPPPPPAVLGKPPANVIAAVDAAAPQGSVWRPRFSKIVTMLSYGGSKPF 240
           ERPDLGPDELPAPPPPPAVLGKPPANVIAAVDAAAPQGSVWRPRFSKIVTMLSYGGSKPF
Sbjct: 210 ERPDLGPDELPAPPPPPAVLGKPPANVIAAVDAAAPQGSVWRPRFSKIVTMLSYGGSKPF 269

Query: 241 KTIIEIDNVEGLLHVREHYTTSSYVERISLSGLAELGSQIYLNKAPMPPLAATELSLSLP 300
           KTIIEIDNVEGLLHVREHYTTSSYVERISLSGLAELGSQIYLNKAPMPPLAATELSLSLP
Sbjct: 270 KTIIEIDNVEGLLHVREHYTTSSYVERISLSGLAELGSQIYLNKAPMPPLAATELSLSLP 329

Query: 301 ATLDPGQTFHVRSSVQRTNDPKAKPVTISKTCTTGATVPANQIHRSLPGSATTLTCTQEG 360
           ATLDPGQTFHVRSSVQRTNDPKAKPVTISKTCTTGATVPANQIHRSLPGSATTLTCTQEG
Sbjct: 330 ATLDPGQTFHVRSSVQRTNDPKAKPVTISKTCTTGATVPANQIHRSLPGSATTLTCTQEG 389

Query: 361 GTPREYAFLQDLGLALLTKEGDAQITYPEFALTR 394
           GTPREYAFLQDLGLAL+TKEGDAQITYPEFALTR
Sbjct: 390 GTPREYAFLQDLGLALMTKEGDAQITYPEFALTR 423


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.131    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,112,695
Number of extensions: 44233
Number of successful extensions: 93
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 2
Length of query: 394
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 307
Effective length of database: 1,207,925
Effective search space: 370832975
Effective search space used: 370832975
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 131 (55.1 bits)