BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0312.p
         (240 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310548|ref|YP_003774640.1| Tol-Pal cell envelope complex s...   477   e-136

>gi|300310548|ref|YP_003774640.1| Tol-Pal cell envelope complex
           subunit YbgF protein [Herbaspirillum seropedicae SmR1]
          Length = 251

 Score =  477 bits (1227), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 240/240 (100%), Positives = 240/240 (100%)

Query: 1   VAALLAATAFLPLTARAGLFDDDEARKAILDIRSKIEALQRDVANKADKNSVLTLSDRND 60
           VAALLAATAFLPLTARAGLFDDDEARKAILDIRSKIEALQRDVANKADKNSVLTLSDRND
Sbjct: 12  VAALLAATAFLPLTARAGLFDDDEARKAILDIRSKIEALQRDVANKADKNSVLTLSDRND 71

Query: 61  NLQSQIAALRGQIEVLTNEITNAQQRQKDFYVDLDARLRKLEPQQVQVDGQTVAVGVSEQ 120
           NLQSQIAALRGQIEVLTNEITNAQQRQKDFYVDLDARLRKLEPQQVQVDGQTVAVGVSEQ
Sbjct: 72  NLQSQIAALRGQIEVLTNEITNAQQRQKDFYVDLDARLRKLEPQQVQVDGQTVAVGVSEQ 131

Query: 121 QAYDAALSQFKGGDYKGAANAFADFLKRYPQSGYAPSAQYWQGNSLYAQRDYKGAIAAQQ 180
           QAYDAALSQFKGGDYKGAANAFADFLKRYPQSGYAPSAQYWQGNSLYAQRDYKGAIAAQQ
Sbjct: 132 QAYDAALSQFKGGDYKGAANAFADFLKRYPQSGYAPSAQYWQGNSLYAQRDYKGAIAAQQ 191

Query: 181 VVVKNYPDNPKAADALLNIASSQAELKDKAAAKKTLEQLIAKYPNTPAAQTGKERMASLK 240
           VVVKNYPDNPKAADALLNIASSQAELKDKAAAKKTLEQLIAKYPNTPAAQTGKERMASLK
Sbjct: 192 VVVKNYPDNPKAADALLNIASSQAELKDKAAAKKTLEQLIAKYPNTPAAQTGKERMASLK 251


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.127    0.341 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 626,417
Number of extensions: 23979
Number of successful extensions: 106
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 157
Effective length of database: 1,226,865
Effective search space: 192617805
Effective search space used: 192617805
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 129 (54.3 bits)