BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0309.p
         (318 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310550|ref|YP_003774642.1| TolA-related transport transmem...   632   0.0  

>gi|300310550|ref|YP_003774642.1| TolA-related transport
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 318

 Score =  632 bits (1629), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/318 (100%), Positives = 318/318 (100%)

Query: 1   MSDNAPYNIPKAPGRWRAITLALVMHVALFLFFWIGIRWQSETPLTVEAEIWDPQYKEAA 60
           MSDNAPYNIPKAPGRWRAITLALVMHVALFLFFWIGIRWQSETPLTVEAEIWDPQYKEAA
Sbjct: 1   MSDNAPYNIPKAPGRWRAITLALVMHVALFLFFWIGIRWQSETPLTVEAEIWDPQYKEAA 60

Query: 61  PLPTPPEPQPQPVVEPPKPQPQPEPKPVPPKVIDEPKVEKPDIALQKEKERKRKEEQEKQ 120
           PLPTPPEPQPQPVVEPPKPQPQPEPKPVPPKVIDEPKVEKPDIALQKEKERKRKEEQEKQ
Sbjct: 61  PLPTPPEPQPQPVVEPPKPQPQPEPKPVPPKVIDEPKVEKPDIALQKEKERKRKEEQEKQ 120

Query: 121 EKLEKEKAEKLKAEKEKAEKEKAEREKKEKLEADKQKKLKEEKQKEDEAKKKADAEKQAA 180
           EKLEKEKAEKLKAEKEKAEKEKAEREKKEKLEADKQKKLKEEKQKEDEAKKKADAEKQAA
Sbjct: 121 EKLEKEKAEKLKAEKEKAEKEKAEREKKEKLEADKQKKLKEEKQKEDEAKKKADAEKQAA 180

Query: 181 DKKKQQQAAADAKAAEARRQEDLKRMMGQATSATGGTGTAEKSQGPKGSPNYANKLRAKI 240
           DKKKQQQAAADAKAAEARRQEDLKRMMGQATSATGGTGTAEKSQGPKGSPNYANKLRAKI
Sbjct: 181 DKKKQQQAAADAKAAEARRQEDLKRMMGQATSATGGTGTAEKSQGPKGSPNYANKLRAKI 240

Query: 241 RSNTVFDNSGVSGNPAGEYTVELFPDGTVRSVRVNKPSGVPGFDEAVRTAVMKSQPFPPD 300
           RSNTVFDNSGVSGNPAGEYTVELFPDGTVRSVRVNKPSGVPGFDEAVRTAVMKSQPFPPD
Sbjct: 241 RSNTVFDNSGVSGNPAGEYTVELFPDGTVRSVRVNKPSGVPGFDEAVRTAVMKSQPFPPD 300

Query: 301 TDNKVPSSFTFTHYPKDQ 318
           TDNKVPSSFTFTHYPKDQ
Sbjct: 301 TDNKVPSSFTFTHYPKDQ 318


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.306    0.125    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 573,740
Number of extensions: 19928
Number of successful extensions: 39
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 233
Effective length of database: 1,217,395
Effective search space: 283653035
Effective search space used: 283653035
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 130 (54.7 bits)