BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0300.p
         (207 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310558|ref|YP_003774650.1| hypothetical protein Hsero_1226...   429   e-122

>gi|300310558|ref|YP_003774650.1| hypothetical protein Hsero_1226
           [Herbaspirillum seropedicae SmR1]
          Length = 231

 Score =  429 bits (1104), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 207/207 (100%), Positives = 207/207 (100%)

Query: 1   MTACICHWTSPIDHAFDVLILQHPLEVGNAKNSVRLLHLSLPASKLVVGSVFDTDELEAL 60
           MTACICHWTSPIDHAFDVLILQHPLEVGNAKNSVRLLHLSLPASKLVVGSVFDTDELEAL
Sbjct: 25  MTACICHWTSPIDHAFDVLILQHPLEVGNAKNSVRLLHLSLPASKLVVGSVFDTDELEAL 84

Query: 61  LHGPSRLRNVSPSEKVHPVLLYTDDASTSATTYFDARTMRVEGQEQFQRVRLVILDGTWR 120
           LHGPSRLRNVSPSEKVHPVLLYTDDASTSATTYFDARTMRVEGQEQFQRVRLVILDGTWR
Sbjct: 85  LHGPSRLRNVSPSEKVHPVLLYTDDASTSATTYFDARTMRVEGQEQFQRVRLVILDGTWR 144

Query: 121 KSRKMLFENPILQTLPRLVLSDTPASRYTIRKSHKPEQLSTLEAVGYALMQLERNSEKYH 180
           KSRKMLFENPILQTLPRLVLSDTPASRYTIRKSHKPEQLSTLEAVGYALMQLERNSEKYH
Sbjct: 145 KSRKMLFENPILQTLPRLVLSDTPASRYTIRKSHKPEQLSTLEAVGYALMQLERNSEKYH 204

Query: 181 PLLTAFDNFVLQQGYMRLHGQAVRRGE 207
           PLLTAFDNFVLQQGYMRLHGQAVRRGE
Sbjct: 205 PLLTAFDNFVLQQGYMRLHGQAVRRGE 231


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 628,011
Number of extensions: 23604
Number of successful extensions: 59
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 1
Length of query: 207
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 126
Effective length of database: 1,236,335
Effective search space: 155778210
Effective search space used: 155778210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)