BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0299.p (715 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310559|ref|YP_003774651.1| TP-dependent DNA helicase RecG ... 1447 0.0 gi|300312329|ref|YP_003776421.1| transcription-repair ATP-depend... 234 1e-62 >gi|300310559|ref|YP_003774651.1| TP-dependent DNA helicase RecG protein [Herbaspirillum seropedicae SmR1] Length = 722 Score = 1447 bits (3745), Expect = 0.0, Method: Compositional matrix adjust. Identities = 709/715 (99%), Positives = 713/715 (99%) Query: 1 MAPCPTNADRMPATAKKTSPPAPKKKATAAKSAAKPAAKPENKLAKLGLHNDMDLVLHLP 60 MAP PTNADRMPATAKKTSPPAPKKKATAAKSAAKPAAKPENKLAKLGLHNDMDLVLHLP Sbjct: 8 MAPRPTNADRMPATAKKTSPPAPKKKATAAKSAAKPAAKPENKLAKLGLHNDMDLVLHLP 67 Query: 61 LRYEDETTLMSIAEASMRGLQTVQVEGVVSSCEVQFRPRRQLIVTVGDDSDQLTLRFLNF 120 LRYEDET+LMSIAEASMRGLQTVQVEGVVSSCEVQFRPRRQLIVTVGDDS QLTLRFLNF Sbjct: 68 LRYEDETSLMSIAEASMRGLQTVQVEGVVSSCEVQFRPRRQLIVTVGDDSGQLTLRFLNF 127 Query: 121 YGSQTKQMAEGTRLRVRGELRHGFFGAEMVHPSYKVVNEGAPLPDVLTPVYPAGEGLSQA 180 YGSQTKQMAEGTRLRVRGELRHGFFGAEMVHPSYKVVNEGAPLPDVLTPVYPAGEGLSQA Sbjct: 128 YGSQTKQMAEGTRLRVRGELRHGFFGAEMVHPSYKVVNEGAPLPDVLTPVYPAGEGLSQA 187 Query: 181 YLRKAIANAMSRLDWSDTLPPSMLATLNLAAFEPSVRLLHNPPPDVDEHALIEKSHPAWI 240 YLRKAIANAMSRLDWSDTLPPSMLATLNLAAFEPSVRLLHNPPPDVDEHALIEKSHPAWI Sbjct: 188 YLRKAIANAMSRLDWSDTLPPSMLATLNLAAFEPSVRLLHNPPPDVDEHALIEKSHPAWI 247 Query: 241 RMKFDELLAQQLSLKRAQAARRAESARALPVTGRITEELTKVLPFQLTGAQQRVLEEIRA 300 RMKFDELLAQQLSLKRAQAARRA+SARALPVTGRITEELT++LPFQLTGAQQRVLEEIRA Sbjct: 248 RMKFDELLAQQLSLKRAQAARRAKSARALPVTGRITEELTRLLPFQLTGAQQRVLEEIRA 307 Query: 301 DLRQSFPMQRLLQGDVGSGKTVVAALAAAQAIDSGCQAVLMAPTEILAEQHFRKIAAWME 360 DLRQSFPMQRLLQGDVGSGKTVVAALAAAQAIDSGCQAVLMAPTEILAEQHFRKIAAWME Sbjct: 308 DLRQSFPMQRLLQGDVGSGKTVVAALAAAQAIDSGCQAVLMAPTEILAEQHFRKIAAWME 367 Query: 361 PLDVGVAWLSGSQKKKEKTEALAHIESGAARLVIGTHALIQDTVQFENLGLVIVDEQHRF 420 PLDVGVAWLSGSQKKKEKTEALAHIESGAARLVIGTHALIQDTVQFENLGLVIVDEQHRF Sbjct: 368 PLDVGVAWLSGSQKKKEKTEALAHIESGAARLVIGTHALIQDTVQFENLGLVIVDEQHRF 427 Query: 421 GVGQRLALRNKSFNPADHDSPAVPHQLMMSATPIPRTLAMTYYADLEVSVIDELPPGRSP 480 GVGQRLALRNKSFNPADHDSPAVPHQLMMSATPIPRTLAMTYYADLEVSVIDELPPGRSP Sbjct: 428 GVGQRLALRNKSFNPADHDSPAVPHQLMMSATPIPRTLAMTYYADLEVSVIDELPPGRSP 487 Query: 481 IVTRVIDQNRRDEVIERVHAAALEGKQIYWVCPLIEESEALQLQTATDTHAALSAALPDL 540 IVTRVIDQNRRDEVIERVHAAALEGKQIYWVCPLIEESEALQLQTATDTHAALSAALPDL Sbjct: 488 IVTRVIDQNRRDEVIERVHAAALEGKQIYWVCPLIEESEALQLQTATDTHAALSAALPDL 547 Query: 541 QIGLVHGRMKPVEKQMVMEGFSRGAIHLLVATTVIEVGVDVPNASLMVIEHAERFGLSQL 600 QIGLVHGRMKPVEKQMVMEGFSRGAIHLLVATTVIEVGVDVPNASLMVIEHAERFGLSQL Sbjct: 548 QIGLVHGRMKPVEKQMVMEGFSRGAIHLLVATTVIEVGVDVPNASLMVIEHAERFGLSQL 607 Query: 601 HQLRGRVGRGSAASVCLLLYQGPLGGTAKQRLATMRETTDGFEIARRDLDIRGPGEFLGA 660 HQLRGRVGRGSAASVCLLLYQGPLGGTAKQRLATMRETTDGFEIARRDLDIRGPGEFLGA Sbjct: 608 HQLRGRVGRGSAASVCLLLYQGPLGGTAKQRLATMRETTDGFEIARRDLDIRGPGEFLGA 667 Query: 661 RQSGEAMLRFADLATDQWLVEKARDTAQALLQHAPDIVDRHLARWLGGREDYLKV 715 RQSGEAMLRFADLATDQWLVEKARDTAQALLQHAPDIVDRHLARWLGGREDYLKV Sbjct: 668 RQSGEAMLRFADLATDQWLVEKARDTAQALLQHAPDIVDRHLARWLGGREDYLKV 722 >gi|300312329|ref|YP_003776421.1| transcription-repair ATP-dependent coupling factor [Herbaspirillum seropedicae SmR1] Length = 1145 Score = 234 bits (598), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 162/416 (38%), Positives = 218/416 (52%), Gaps = 32/416 (7%) Query: 260 ARRA-ESARALPVTGRITEELTKVLPFQLTGAQQRVLEEIRADLRQSFPMQRLLQGDVGS 318 ARRA A + E F+ T Q + + D+ PM RL+ GDVG Sbjct: 575 ARRALRQGHAFQYSAHDYEAFADSFGFEETADQAAAINAVIKDMTGGKPMDRLICGDVGF 634 Query: 319 GKTVVAALAAAQAIDSGCQAVLMAPTEILAEQHFRKIAAWMEPLDVGVAWLSGSQKKKEK 378 GKT VA AA A+ G Q ++APT +LAEQH A V +A LS + KE Sbjct: 635 GKTEVALRAAFVAVMGGKQVAILAPTTLLAEQHAATFADRFANWPVKIAELSRFRTGKEV 694 Query: 379 TEALAHIESGAARLVIGTHALIQDTVQFENLGLVIVDEQHRFGVGQRLALRNKSFNPADH 438 T+A+ + G +VIGTH L+ D V+F LGLVI+DE+HRFGV Q+ AL++ A+ Sbjct: 695 TQAIKGLGDGTIDIVIGTHKLLSDEVKFSRLGLVIIDEEHRFGVRQKEALKSLR---AEV 751 Query: 439 DSPAVPHQLMMSATPIPRTLAMTYYADLEVSVIDELPPGRSPIVTRVIDQNRRDEVIERV 498 D L ++ATPIPRTL M + SVI P R I T V R E + Sbjct: 752 DV------LTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFV-----RAEQESTI 800 Query: 499 HAAAL----EGKQIYWVCPLIEESEALQLQTATDTHAALSAALPDLQIGLVHGRMKPVEK 554 A L G Q+Y++ +E T + AAL LP+ +IG+ HG+M + Sbjct: 801 REACLRELKRGGQVYFLHNEVE--------TIANRKAALEQLLPEARIGVAHGQMHERDL 852 Query: 555 QMVMEGFSRGAIHLLVATTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGSAAS 614 + VM F ++L+ TT+IE G+DVP A+ +++ A++FGL+QLHQLRGRVGR + Sbjct: 853 EKVMRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRADKFGLAQLHQLRGRVGRSHHQA 912 Query: 615 VCLLLYQG--PLGGTAKQRLAT---MRETTDGFEIARRDLDIRGPGEFLGARQSGE 665 LL Q L A++RL M E GF +A DL+IRG GE LG QSGE Sbjct: 913 YAYLLVQDVQGLSKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEVLGDHQSGE 968 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.133 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,126,071 Number of extensions: 88573 Number of successful extensions: 325 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 322 Number of HSP's successfully gapped: 2 Length of query: 715 Length of database: 1,619,870 Length adjustment: 92 Effective length of query: 623 Effective length of database: 1,184,250 Effective search space: 737787750 Effective search space used: 737787750 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 134 (56.2 bits)