BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0294.p (204 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310563|ref|YP_003774655.1| response regulator protein [Her... 396 e-112 gi|300312940|ref|YP_003777032.1| nitrate/nitrite response regula... 87 8e-19 gi|300311281|ref|YP_003775373.1| LuxR family response regulator ... 81 5e-17 gi|300311885|ref|YP_003775977.1| LuxR family two component respo... 76 2e-15 gi|300312077|ref|YP_003776169.1| response regulator containing a... 72 3e-14 >gi|300310563|ref|YP_003774655.1| response regulator protein [Herbaspirillum seropedicae SmR1] Length = 204 Score = 396 bits (1017), Expect = e-112, Method: Compositional matrix adjust. Identities = 200/204 (98%), Positives = 200/204 (98%) Query: 1 MSTPHLLIIDDHALFRSGLRLVLQNSLPQARLSEAASLEEALHLQGDEEDAPTLLLIDIQ 60 MSTPHLLIIDDHALFRSGLRLVLQNSLPQARLSEAASLEEALHLQGDEEDAPTLLLIDIQ Sbjct: 1 MSTPHLLIIDDHALFRSGLRLVLQNSLPQARLSEAASLEEALHLQGDEEDAPTLLLIDIQ 60 Query: 61 LGGLNGIDGMAVLARRWPGVPAIILSADDTDHTVRQALQRGASAFVSKAATAEHIMAVIA 120 LGGLNGIDGMAVLARRWPGVPAIILSADDTDHTVRQALQRGASAFVSKAATAEHIMAVIA Sbjct: 61 LGGLNGIDGMAVLARRWPGVPAIILSADDTDHTVRQALQRGASAFVSKAATAEHIMAVIA 120 Query: 121 KVGAGLTPCPNQRGDQPDDKAQFTPRQYEVLGLLSQGLTNKAIGRRLNLSENTIRGHVQA 180 KVG GLTPC N RGDQPDDKAQFTPRQYEVLGLLSQGLTNKAIGRRLNLSENTIRGHVQA Sbjct: 121 KVGGGLTPCQNLRGDQPDDKAQFTPRQYEVLGLLSQGLTNKAIGRRLNLSENTIRGHVQA 180 Query: 181 ILLALDVDNRAEAAFAARRGGLVS 204 ILLALDVDNRAEAAFAARR GLVS Sbjct: 181 ILLALDVDNRAEAAFAARRRGLVS 204 >gi|300312940|ref|YP_003777032.1| nitrate/nitrite response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 219 Score = 87.0 bits (214), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 62/220 (28%), Positives = 109/220 (49%), Gaps = 32/220 (14%) Query: 6 LLIIDDHALFRSGLRLVLQNSLPQARLSEAAS----LEEALHLQGDEEDAPTLLLIDIQL 61 +L++DDH LFRSG+RL+LQ + EA ++ AL L+ P ++L+D+ + Sbjct: 5 ILLVDDHTLFRSGIRLLLQRHPDIDVVGEAVDGLDGVKRALQLR------PDVVLMDLNM 58 Query: 62 GGLNGIDGMAVLARRWPGVPAIILSADDTDHTVRQALQRGASAFVSKAATAEHIMAVIAK 121 GL+G++ M ++ + P ++LS + + AL GA ++ K A++++ I + Sbjct: 59 PGLSGLEAMQLIVQDLPETAVLMLSVSEEADDLTTALHNGARGYLLKNIEADYLVQSIKR 118 Query: 122 VGAGLTPC-------------------PNQRGDQPDDKAQFTPRQYEVLGLLSQGLTNKA 162 AG P P +P DK T R+ + +++G +NK Sbjct: 119 AAAG-EPVISESMTAKLVMQLRAGAGNPAASAAEPTDK--LTARERATMVCIARGQSNKE 175 Query: 163 IGRRLNLSENTIRGHVQAILLALDVDNRAEAAFAARRGGL 202 I R L ++E+T++ HVQ +L L + +R + A A GL Sbjct: 176 IARSLEVAESTVKIHVQNLLRKLQLSSRVQIAVYAVEHGL 215 >gi|300311281|ref|YP_003775373.1| LuxR family response regulator protein [Herbaspirillum seropedicae SmR1] Length = 217 Score = 81.3 bits (199), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 65/191 (34%), Positives = 100/191 (52%), Gaps = 6/191 (3%) Query: 6 LLIIDDHALFRSGLRLVLQNSLPQARLSEAASLEEALHLQGDEEDAPTLLLIDIQLGGLN 65 +++IDDH L R GLR L+ ++EA +EAL +E L L+DI + G+N Sbjct: 14 IMLIDDHPLVRDGLRARLETVPGLEVVAEAGHADEALAAAAAQE--IDLTLMDINMRGIN 71 Query: 66 GIDGMAVLARRWPGVPAIILSADDTDHTVRQALQRGASAFVSKAATAEHIMAVIAKVGAG 125 GI+ A+ R P + +ILS D V Q++Q GA +V K A ++ I+ I V +G Sbjct: 72 GIELTALFHARHPEIAVLILSMHDKAEYVMQSIQAGARGYVLKDAPSQDIVHAIETVRSG 131 Query: 126 ---LTPCPNQRGDQP-DDKAQFTPRQYEVLGLLSQGLTNKAIGRRLNLSENTIRGHVQAI 181 + ++ QP + T R+ EVL ++ G +NK I R L+LS T+ H I Sbjct: 132 GIYYSAALARQLTQPLPPRELLTQREREVLMHIANGESNKQIARELDLSVRTVETHRLNI 191 Query: 182 LLALDVDNRAE 192 L++D +AE Sbjct: 192 KRKLNIDGQAE 202 >gi|300311885|ref|YP_003775977.1| LuxR family two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 216 Score = 76.3 bits (186), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 54/194 (27%), Positives = 98/194 (50%), Gaps = 14/194 (7%) Query: 6 LLIIDDHALFRSGLRLVLQNSLPQARLSEAASLEEALHLQGDEEDAPTLLLIDIQLGGLN 65 +++ DDHAL RSG++ +L ++P + AS + A ++ + P L+L+DI + G+N Sbjct: 5 IMLADDHALVRSGIKALL-TAMPGVEVVGEAS-DGAEVIEMIPQLKPDLVLLDIAMKGMN 62 Query: 66 GIDGMAVLARRWPGVPAIILSADDTDHTVRQALQRGASAFVSKAATAEHIMAVIAKVGAG 125 G++ + L +P + ++LS ++ V QAL GA+ ++ K + A + + +V G Sbjct: 63 GLEALRRLRGEYPTIRFLMLSMYGSEEYVMQALNAGANGYLFKDSAATELEKALYEVKHG 122 Query: 126 LTPCPNQRGDQPDDKAQ------------FTPRQYEVLGLLSQGLTNKAIGRRLNLSENT 173 + + D TPRQ E+L L+++G K I +LN+S T Sbjct: 123 RQYLDSHISREALDNYMKRVAQNGTPVEVLTPRQREILQLIAEGNNTKEIAYQLNVSAKT 182 Query: 174 IRGHVQAILLALDV 187 I H ++ LD+ Sbjct: 183 IETHRAQLMERLDI 196 >gi|300312077|ref|YP_003776169.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 217 Score = 72.0 bits (175), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 62/208 (29%), Positives = 99/208 (47%), Gaps = 12/208 (5%) Query: 6 LLIIDDHALFRSGLRLVLQNSLPQARLSEAASLEEALHLQGDEEDAPTLLLIDIQLGGLN 65 +LI DDHA+ R GLR + S AA+ EA+ L E +LL+DI L N Sbjct: 11 VLIADDHAIVREGLRQICAGSKDIMVAGNAANGLEAIKLA--REGNGDVLLLDIVLPDRN 68 Query: 66 GIDGMAVLARRWPGVPAIILSADDTDHTVRQALQRGASAFVSKAATAEHIMAVIAKVGAG 125 GID + + + P +P +ILS D +AL+ GA+ F++K A ++A I + +G Sbjct: 69 GIDILKQIRKEQPELPVLILSIHREDQYAIRALKAGAAGFLNKQAAPAELLAAIRQAASG 128 Query: 126 ---LTPC-----PNQRGDQPDD--KAQFTPRQYEVLGLLSQGLTNKAIGRRLNLSENTIR 175 ++P NQ G + + R+Y+ + +++ G T I L LS TI Sbjct: 129 RKYVSPSLAQELANQIGFDHETPLHETLSDREYQTMVMIASGKTVSDIAAELTLSVKTIS 188 Query: 176 GHVQAILLALDVDNRAEAAFAARRGGLV 203 + +L + + + AE A + LV Sbjct: 189 MYRSRVLSKMKMRHNAELTHYALKNALV 216 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.135 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 579,995 Number of extensions: 22281 Number of successful extensions: 138 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 134 Number of HSP's successfully gapped: 8 Length of query: 204 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 123 Effective length of database: 1,236,335 Effective search space: 152069205 Effective search space used: 152069205 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)