BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0289.p
         (389 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310567|ref|YP_003774659.1| chromate efflux protein [Herbas...   616   e-177
gi|300312749|ref|YP_003776841.1| chromate transport protein [Her...    58   1e-09

>gi|300310567|ref|YP_003774659.1| chromate efflux protein
           [Herbaspirillum seropedicae SmR1]
          Length = 482

 Score =  616 bits (1588), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 386/389 (99%), Positives = 386/389 (99%), Gaps = 1/389 (0%)

Query: 1   VFLVFLRLGLTSFGGPAAHLGYFRTEFVARRGWLSEAAYADLVAMCQFLPGPSSSQVGMA 60
           VFLVFLRLGLTSFGGPAAHLGYFRTEFVARRGWLSEAAYADLVAMCQFLPGPSSSQVGMA
Sbjct: 95  VFLVFLRLGLTSFGGPAAHLGYFRTEFVARRGWLSEAAYADLVAMCQFLPGPSSSQVGMA 154

Query: 61  IGVLRAGYGGALAAWLGFTLPSALLLMGLALSVLQQAHWLSAEVVHGLKIVAVAIVAQAV 120
           IGVLRAGYGGALAAWLGFTLPSALLLMGLALSVLQQAHWLSAEVVHGLKIVAVAIVAQAV
Sbjct: 155 IGVLRAGYGGALAAWLGFTLPSALLLMGLALSVLQQAHWLSAEVVHGLKIVAVAIVAQAV 214

Query: 121 WGMAGSLCRGLQRQVITLAAALAALLMSGALAQLAIIVTAALAGWLLLKSVPATRLDDLP 180
           WGMAGSLCRGLQRQVITLAAALAALLMSGALAQLAIIVTAALAGWLLLKSVP  RLDDLP
Sbjct: 215 WGMAGSLCRGLQRQVITLAAALAALLMSGALAQLAIIVTAALAGWLLLKSVPTARLDDLP 274

Query: 181 PTLNRRVGAACLLLFLGLLLGIPALAAWHPASWLQLTSIFYRVGSLVFGGGHVVLPLLQA 240
           PTLNRRVGAACLLLFLGLLLGIPALAAWHPASWLQLTSIFYRVGSLVFGGGHVVLPLLQA
Sbjct: 275 PTLNRRVGAACLLLFLGLLLGIPALAAWHPASWLQLTSIFYRVGSLVFGGGHVVLPLLQA 334

Query: 241 ELVPAGWLDKDVFLAGYGAAQAVPGPFLFTLAAYLGVVMSSWPNGVAGGLLCLVAIFTPS 300
           ELVPAGWLDKDVFLAGYGAAQAVPGP LFTLAAYLGVVMSSWPNGVAGGLLCLVAIFTPS
Sbjct: 335 ELVPAGWLDKDVFLAGYGAAQAVPGP-LFTLAAYLGVVMSSWPNGVAGGLLCLVAIFTPS 393

Query: 301 FLLVIGLLPFWDSVRRNGPMQAALAGVNAAVVGLLLAALYQPVWTSAIHSLRDLLVALAA 360
           FLLVIGLLPFWDSVRRNGPMQAALAGVNAAVVGLLLAALYQPVWTSAIHSLRDLLVALAA
Sbjct: 394 FLLVIGLLPFWDSVRRNGPMQAALAGVNAAVVGLLLAALYQPVWTSAIHSLRDLLVALAA 453

Query: 361 LAALVYLRMPSWAVVLLVVLAVLLPGLAG 389
           LAALVYLRMPSWAVVLLVVLAVLLPGLAG
Sbjct: 454 LAALVYLRMPSWAVVLLVVLAVLLPGLAG 482


>gi|300312749|ref|YP_003776841.1| chromate transport protein
           [Herbaspirillum seropedicae SmR1]
          Length = 221

 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 57/99 (57%), Gaps = 9/99 (9%)

Query: 2   FLVFLRLGLTSFGG--PAAHLGYFRTEFVARRGWLSEAAYADLVAMCQFLPGPSSSQVGM 59
           FL FL LG+T+FGG  P AH        V RR WL++  + +L+ +CQFLPG +   + +
Sbjct: 33  FLGFLGLGMTAFGGALPLAH-----RMIVERRKWLTDPEFVELLGLCQFLPGGNIINLSV 87

Query: 60  AIGVLRAGYGGALAAWLG-FTLPS-ALLLMGLALSVLQQ 96
           A+G+   G+ GALA   G   +PS  ++L+G+     Q 
Sbjct: 88  ALGMKFRGWKGALAGVTGLIAVPSMVVILLGMIYQHFQH 126


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.141    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 944,732
Number of extensions: 32830
Number of successful extensions: 204
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 3
Length of query: 389
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 302
Effective length of database: 1,207,925
Effective search space: 364793350
Effective search space used: 364793350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)