BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0286.p
         (634 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310569|ref|YP_003774661.1| export membrane protein SecD tr...  1276   0.0  

>gi|300310569|ref|YP_003774661.1| export membrane protein SecD
           transmembrane [Herbaspirillum seropedicae SmR1]
          Length = 634

 Score = 1276 bits (3301), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 634/634 (100%), Positives = 634/634 (100%)

Query: 1   MNRYSLWKYALIVLALLFGVIYTVPNFFGESPAVQISSAKSTLKVEPAVAGRVDQILKQG 60
           MNRYSLWKYALIVLALLFGVIYTVPNFFGESPAVQISSAKSTLKVEPAVAGRVDQILKQG
Sbjct: 1   MNRYSLWKYALIVLALLFGVIYTVPNFFGESPAVQISSAKSTLKVEPAVAGRVDQILKQG 60

Query: 61  NLGAESVAFDNSGSQPSVRARFATTDIQFKAKALLEKELNTDPSDPTYIVAFNLLPNTPQ 120
           NLGAESVAFDNSGSQPSVRARFATTDIQFKAKALLEKELNTDPSDPTYIVAFNLLPNTPQ
Sbjct: 61  NLGAESVAFDNSGSQPSVRARFATTDIQFKAKALLEKELNTDPSDPTYIVAFNLLPNTPQ 120

Query: 121 WLQSLHAFPMYLGLDLRGGVHFLMQVDIKAVLNKRLQGMQASVRSLLRDKNIRHSGISRS 180
           WLQSLHAFPMYLGLDLRGGVHFLMQVDIKAVLNKRLQGMQASVRSLLRDKNIRHSGISRS
Sbjct: 121 WLQSLHAFPMYLGLDLRGGVHFLMQVDIKAVLNKRLQGMQASVRSLLRDKNIRHSGISRS 180

Query: 181 GDSIEISFRDADTRNKARAALGELQEMLLTDAGSGDDLKLIATLRPEALKQTQEDGVKQN 240
           GDSIEISFRDADTRNKARAALGELQEMLLTDAGSGDDLKLIATLRPEALKQTQEDGVKQN
Sbjct: 181 GDSIEISFRDADTRNKARAALGELQEMLLTDAGSGDDLKLIATLRPEALKQTQEDGVKQN 240

Query: 241 ISTLSKRVNELGVAEPLIQRQGADRIVVELPGVQDVSRAKDIIGRTATLEVRMVDESVVR 300
           ISTLSKRVNELGVAEPLIQRQGADRIVVELPGVQDVSRAKDIIGRTATLEVRMVDESVVR
Sbjct: 241 ISTLSKRVNELGVAEPLIQRQGADRIVVELPGVQDVSRAKDIIGRTATLEVRMVDESVVR 300

Query: 301 GTEETTAIPFGSELFKIGKGAPVVLNKEPVLTGDYISNASASFDENHQPAVSIDLNGDGG 360
           GTEETTAIPFGSELFKIGKGAPVVLNKEPVLTGDYISNASASFDENHQPAVSIDLNGDGG
Sbjct: 301 GTEETTAIPFGSELFKIGKGAPVVLNKEPVLTGDYISNASASFDENHQPAVSIDLNGDGG 360

Query: 361 RKMREATRDKVGKAMAIVLFEKGKGEVLTVATIRSELGSRFQITGMGSPEAASDLALLLR 420
           RKMREATRDKVGKAMAIVLFEKGKGEVLTVATIRSELGSRFQITGMGSPEAASDLALLLR
Sbjct: 361 RKMREATRDKVGKAMAIVLFEKGKGEVLTVATIRSELGSRFQITGMGSPEAASDLALLLR 420

Query: 421 AGSLAAPMDIIEERTIGPQLGADNIKKGFDSVLYGFLAMAIFMVIYYQLFGFFSALALSV 480
           AGSLAAPMDIIEERTIGPQLGADNIKKGFDSVLYGFLAMAIFMVIYYQLFGFFSALALSV
Sbjct: 421 AGSLAAPMDIIEERTIGPQLGADNIKKGFDSVLYGFLAMAIFMVIYYQLFGFFSALALSV 480

Query: 481 NVLLLVALLSTLQVTLTLPGIAAIALALGMAIDSNVLINERIREELRAGNSPQAAIAAGF 540
           NVLLLVALLSTLQVTLTLPGIAAIALALGMAIDSNVLINERIREELRAGNSPQAAIAAGF
Sbjct: 481 NVLLLVALLSTLQVTLTLPGIAAIALALGMAIDSNVLINERIREELRAGNSPQAAIAAGF 540

Query: 541 DRAWATILDSNVTTLIAGLALLIFGSGAIRGFAVVHCLGILTSMFSAVFFSRGVVNLWYG 600
           DRAWATILDSNVTTLIAGLALLIFGSGAIRGFAVVHCLGILTSMFSAVFFSRGVVNLWYG
Sbjct: 541 DRAWATILDSNVTTLIAGLALLIFGSGAIRGFAVVHCLGILTSMFSAVFFSRGVVNLWYG 600

Query: 601 RKKRLSSLAIGQIWKPEGEVLTTSGKASAKRDGK 634
           RKKRLSSLAIGQIWKPEGEVLTTSGKASAKRDGK
Sbjct: 601 RKKRLSSLAIGQIWKPEGEVLTTSGKASAKRDGK 634


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,736,219
Number of extensions: 69188
Number of successful extensions: 229
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 230
Number of HSP's successfully gapped: 2
Length of query: 634
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 543
Effective length of database: 1,188,985
Effective search space: 645618855
Effective search space used: 645618855
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 134 (56.2 bits)