BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0284.p
         (285 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310571|ref|YP_003774663.1| transmembrane protein [Herbaspi...   583   e-168
gi|300309508|ref|YP_003773600.1| dinucleotide-utilizing enzyme p...    72   5e-14

>gi|300310571|ref|YP_003774663.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 285

 Score =  583 bits (1503), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 284/285 (99%), Positives = 285/285 (100%)

Query: 1   MNASIDLNDIDYERRFGGVARLYGAAALQRFRQARVCVVGVGGVGSWIVEALARSAIGHL 60
           MNASIDLNDIDYERRFGGVARLYGAAALQRFRQARVCVVGVGGVGSWIVEALARSAIGHL
Sbjct: 1   MNASIDLNDIDYERRFGGVARLYGAAALQRFRQARVCVVGVGGVGSWIVEALARSAIGHL 60

Query: 61  TLVDLDNLAESNVNRQIHALTTTLGQAKVTALHERIRQINPTCVVTEVEDFVDPDNVEKM 120
           TLVDLDNLAESNVNRQIHALTTTLGQAKVTALHERIRQINPTCVVTEVEDFVDPDNVEKM
Sbjct: 61  TLVDLDNLAESNVNRQIHALTTTLGQAKVTALHERIRQINPTCVVTEVEDFVDPDNVEKM 120

Query: 121 LGGERFDYVIDAIDNVPAKVAMIAWCRKNGMPMVTIGSAGGQIDPTQIEIRDLCRTEQEP 180
           LGGERFDYVIDAIDNVPAKVAMIAWCRKNGMPMVTIGSAGGQIDPTQIEIRDLCRTEQEP
Sbjct: 121 LGGERFDYVIDAIDNVPAKVAMIAWCRKNGMPMVTIGSAGGQIDPTQIEIRDLCRTEQEP 180

Query: 181 LLAKVRKRLRAQHGFPRGTKNKFHIDAVFSTEPLRFPELAEGEACEIAPAEDMDVGEDAA 240
           LLAKVRKRLRAQHGFPRGTKNKFHIDAVFSTEPLRFPELAEGEACEIAPAED+DVGEDAA
Sbjct: 181 LLAKVRKRLRAQHGFPRGTKNKFHIDAVFSTEPLRFPELAEGEACEIAPAEDIDVGEDAA 240

Query: 241 DSTQAGVTGLNCAGFGSAMVVTASFGLVAAAHVLKKLAEQAAAQP 285
           DSTQAGVTGLNCAGFGSAMVVTASFGLVAAAHVLKKLAEQAAAQP
Sbjct: 241 DSTQAGVTGLNCAGFGSAMVVTASFGLVAAAHVLKKLAEQAAAQP 285


>gi|300309508|ref|YP_003773600.1| dinucleotide-utilizing enzyme
           protein [Herbaspirillum seropedicae SmR1]
          Length = 254

 Score = 72.0 bits (175), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 68/126 (53%), Gaps = 2/126 (1%)

Query: 30  RFRQARVCVVGVGGVGSWIVEALARSAIGHLTLVDLDNLAESNVNRQIHALTTTLGQAKV 89
           R  Q    V+G GG+GS     LA + +G +TLVD D +  +N+ RQI   T  +GQ KV
Sbjct: 25  RLLQGHALVIGAGGLGSPAAMYLASAGVGRITLVDHDTVDLTNLQRQIMHTTARVGQPKV 84

Query: 90  TALHERIRQINPTCVVTEVEDFVDPDNVEKMLGGERFDYVIDAIDNVPAKVAMIAWCRKN 149
            +  + + QINP   VT + + V+ + +  ++   + D V+D  DN   + A+   C   
Sbjct: 85  ESGRQALEQINPGVQVTALAERVEAERLHALVA--QADVVLDCSDNFATRHAVNRACVAA 142

Query: 150 GMPMVT 155
           G+P+V+
Sbjct: 143 GVPLVS 148


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 802,345
Number of extensions: 31322
Number of successful extensions: 93
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 2
Length of query: 285
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 201
Effective length of database: 1,222,130
Effective search space: 245648130
Effective search space used: 245648130
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)