BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0283.p
         (308 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310572|ref|YP_003774664.1| drug/metabolite transporter (DM...   603   e-174

>gi|300310572|ref|YP_003774664.1| drug/metabolite transporter (DMT)
           superfamily permease [Herbaspirillum seropedicae SmR1]
          Length = 312

 Score =  603 bits (1555), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 307/308 (99%), Positives = 307/308 (99%)

Query: 1   MILQGILYSALAGAAWGLVFLAPELTRSFSPWQLTAGRYLAYGLFAGVLIAPRLRRLLPH 60
           MILQGILYSALAGAAWGLVFLAPELTRSFSPWQLTAGRYLAYGLFAGVLIAPRLRRLLPH
Sbjct: 5   MILQGILYSALAGAAWGLVFLAPELTRSFSPWQLTAGRYLAYGLFAGVLIAPRLRRLLPH 64

Query: 61  LGRDEWRALVWLSLLGNVVYYVFLASAVQLGGMAMTSLVIGFLPVAVSIIGSRGEGAVPL 120
           LGRDEWRALVWLSLLGNVVYYVFLASAVQLGGMAMTSLVIGFLPVAVSIIGSRGEGAVPL
Sbjct: 65  LGRDEWRALVWLSLLGNVVYYVFLASAVQLGGMAMTSLVIGFLPVAVSIIGSRGEGAVPL 124

Query: 121 RKLVPSLALGLAGIACVAWQSLSVSTAGQARDSVIGFFCALAALISWTTYAVGNSRWLAR 180
           RKLVPSLALGLAGIACVAWQSLSVS AGQARDSVIGFFCALAALISWTTYAVGNSRWLAR
Sbjct: 125 RKLVPSLALGLAGIACVAWQSLSVSAAGQARDSVIGFFCALAALISWTTYAVGNSRWLAR 184

Query: 181 LHHISAHDWNLLIGVVTGLLSLFVAVPAFTVMLQPHPGHDWLHFAAVSAGVAICASLFGN 240
           LHHISAHDWNLLIGVVTGLLSLFVAVPAFTVMLQPHPGHDWLHFAAVSAGVAICASLFGN
Sbjct: 185 LHHISAHDWNLLIGVVTGLLSLFVAVPAFTVMLQPHPGHDWLHFAAVSAGVAICASLFGN 244

Query: 241 ACWNKASRLLPLTMIGQMILFETLFALLYGFLWEQRWPTLLEIAAMVLVTASVLLCVSAH 300
           ACWNKASRLLPLTMIGQMILFETLFALLYGFLWEQRWPTLLEIAAMVLVTASVLLCVSAH
Sbjct: 245 ACWNKASRLLPLTMIGQMILFETLFALLYGFLWEQRWPTLLEIAAMVLVTASVLLCVSAH 304

Query: 301 RIDEGGGH 308
           RIDEGGGH
Sbjct: 305 RIDEGGGH 312


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.140    0.453 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,034,248
Number of extensions: 44602
Number of successful extensions: 240
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 241
Number of HSP's successfully gapped: 2
Length of query: 308
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 223
Effective length of database: 1,217,395
Effective search space: 271479085
Effective search space used: 271479085
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 130 (54.7 bits)