BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0279.p (255 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310576|ref|YP_003774668.1| transcription regulator protein... 500 e-143 gi|300311694|ref|YP_003775786.1| AraC family transcription regul... 61 1e-10 gi|300311726|ref|YP_003775818.1| AraC family transcription regul... 60 1e-10 gi|300313797|ref|YP_003777889.1| AraC family transcription regul... 56 3e-09 gi|300311760|ref|YP_003775852.1| transcription regulator protein... 54 9e-09 >gi|300310576|ref|YP_003774668.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 255 Score = 500 bits (1288), Expect = e-143, Method: Compositional matrix adjust. Identities = 253/255 (99%), Positives = 253/255 (99%) Query: 1 MSLPSLPHPDLAPPLAQLHLRSYRDESLAHRHDFPQLVLPLAGHLALDIGGREGRADVAT 60 MSLPSLPHPDLAPPLAQLHLRSYRDESLAHRHDFPQLVLPLAGHLALDIGGREGRAD AT Sbjct: 1 MSLPSLPHPDLAPPLAQLHLRSYRDESLAHRHDFPQLVLPLAGHLALDIGGREGRADAAT 60 Query: 61 GAFVEPGARHATRAGGENRSLVLDLAPATVNTLQLEQLAQRPFLPLSVAAGKLVEFMAVS 120 GAFVEPGARHATRAGGENRSLVLDLAPATVN LQLEQLAQRPFLPLSVAAGKLVEFMAVS Sbjct: 61 GAFVEPGARHATRAGGENRSLVLDLAPATVNALQLEQLAQRPFLPLSVAAGKLVEFMAVS 120 Query: 121 LAQARSSPAMLQHWVPLLLDTLAQRTPQALSRLRRMMAQVEAQVAHPWTVAQMAEAAAIS 180 LAQARSSPAMLQHWVPLLLDTLAQRTPQALSRLRRMMAQVEAQVAHPWTVAQMAEAAAIS Sbjct: 121 LAQARSSPAMLQHWVPLLLDTLAQRTPQALSRLRRMMAQVEAQVAHPWTVAQMAEAAAIS 180 Query: 181 PSRLHEWFRAELDSSPRAWLAEVRMAQACQLLRTSALPLAQVAQRCGYADQSALTHAMRR 240 PSRLHEWFRAELDSSPRAWLAEVRMAQACQLLRTSALPLAQVAQRCGYADQSALTHAMRR Sbjct: 181 PSRLHEWFRAELDSSPRAWLAEVRMAQACQLLRTSALPLAQVAQRCGYADQSALTHAMRR 240 Query: 241 LRGVTPASYRKNYLE 255 LRGVTPASYRKNYLE Sbjct: 241 LRGVTPASYRKNYLE 255 >gi|300311694|ref|YP_003775786.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 375 Score = 60.8 bits (146), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 25/101 (24%), Positives = 53/101 (52%) Query: 152 RLRRMMAQVEAQVAHPWTVAQMAEAAAISPSRLHEWFRAELDSSPRAWLAEVRMAQACQL 211 R+++ + ++ ++ +++ A+ ++S F+ E +P +L ++R+ AC Sbjct: 254 RIQKALIWLDEHMSSSINMSEAADHVSMSERNFQREFKRETGETPHCFLTKIRIEAACLY 313 Query: 212 LRTSALPLAQVAQRCGYADQSALTHAMRRLRGVTPASYRKN 252 L+ + LP+ ++A+RCG L R+ GV+P YRK Sbjct: 314 LKETDLPIEKIARRCGLVSGEHLARLFRKHHGVSPGEYRKK 354 >gi|300311726|ref|YP_003775818.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 304 Score = 60.5 bits (145), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 59/183 (32%), Positives = 83/183 (45%), Gaps = 16/183 (8%) Query: 75 GGENRSLVLDLAPATV---NTLQLEQLAQRPFLPLSVAAGK-LVEFMAVSLAQARSSPAM 130 G + SL++ L P V + +L QL Q + + GK EFM LA+ AM Sbjct: 119 GCADPSLLVSLLPKVVHVQGSTRLSQLVQ--MVGEEASGGKPGSEFMLSRLAEMLLVEAM 176 Query: 131 LQHWV----PLLLDTLAQRTPQALSRLRRMMAQVEAQVAHPWTVAQMAEAAAISPSRLHE 186 P LL L RL + + A++ W+VAQ+A AA+S S E Sbjct: 177 RSSTSTSAPPGLLRGLGDE------RLAVALKHMHARIEQRWSVAQLARIAALSRSSFFE 230 Query: 187 WFRAELDSSPRAWLAEVRMAQACQLLRTSALPLAQVAQRCGYADQSALTHAMRRLRGVTP 246 F L +P A+L RM A +LLR L ++++A+R GY SA + A R G P Sbjct: 231 RFTRTLGVAPMAYLLAWRMEIARELLRRGELSVSEIAERTGYGSTSAFSVAFTRQVGQPP 290 Query: 247 ASY 249 Y Sbjct: 291 GLY 293 >gi|300313797|ref|YP_003777889.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 294 Score = 55.8 bits (133), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 47/81 (58%) Query: 169 TVAQMAEAAAISPSRLHEWFRAELDSSPRAWLAEVRMAQACQLLRTSALPLAQVAQRCGY 228 ++A++A + +S + F+ SP AWL + R+A AC+LL + +A CG+ Sbjct: 209 SLAEIAAQSGLSRAHFSRAFKQSFGLSPHAWLQQQRIALACRLLHEGGKSMTTIALECGF 268 Query: 229 ADQSALTHAMRRLRGVTPASY 249 +DQS + ++++G+ PA++ Sbjct: 269 SDQSHFSRVFKQVQGMGPAAW 289 >gi|300311760|ref|YP_003775852.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 319 Score = 54.3 bits (129), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 75/154 (48%), Gaps = 10/154 (6%) Query: 96 EQLAQRPFLPLSVAAGKLVEFMAVSLAQARSSPAMLQHWVPLLLDTLAQRTPQALSRLRR 155 E AQRP V +L+E + + ++ + P + P LL LA RL + Sbjct: 158 ESRAQRP--AREVVLARLLEVLLIEALRSSNDPTVAAS--PGLLRGLAD------VRLAQ 207 Query: 156 MMAQVEAQVAHPWTVAQMAEAAAISPSRLHEWFRAELDSSPRAWLAEVRMAQACQLLRTS 215 + + AQ A W V ++A AA+S S E FR E+ +P +L RMA A +LL + Sbjct: 208 AIRALHAQPAQDWNVPRLARVAALSRSSFFERFRREVGLTPMDYLLAWRMALAKRLLLRA 267 Query: 216 ALPLAQVAQRCGYADQSALTHAMRRLRGVTPASY 249 +A+VA + GY+ S + A R G+ P+ + Sbjct: 268 DGSIAEVALQVGYSSASTFSVAFSRHVGLPPSQF 301 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.131 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 849,673 Number of extensions: 34863 Number of successful extensions: 184 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 190 Number of HSP's successfully gapped: 6 Length of query: 255 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 172 Effective length of database: 1,226,865 Effective search space: 211020780 Effective search space used: 211020780 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)