BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0273.p
         (365 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310582|ref|YP_003774674.1| methyl-accepting chemotaxis I p...   617   e-178
gi|300312840|ref|YP_003776932.1| methyl-accepting chemotaxis I p...   107   1e-24

>gi|300310582|ref|YP_003774674.1| methyl-accepting chemotaxis I
           protein [Herbaspirillum seropedicae SmR1]
          Length = 668

 Score =  617 bits (1590), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 303/306 (99%), Positives = 305/306 (99%)

Query: 1   MGQLLANLKLWQKFALLGLLGLVLFGVPTTLYFNSTERVIRFKQQEIAGVEPVRRLLRSV 60
           MGQLLANLKLWQKFALLGLLGLVLFGVPTTLYFNSTERVIRFKQQEIAGVEPVRRLLRSV
Sbjct: 1   MGQLLANLKLWQKFALLGLLGLVLFGVPTTLYFNSTERVIRFKQQEIAGVEPVRRLLRSV 60

Query: 61  QLMQQHRGMSAVMLNGAADMAGPRQAKAAEVDQALAALAGALEEVGRDDTRIPVLFKNQL 120
           QLMQQHRGMSAVMLNGAADMAGPRQAKAAEVDQALAALAGALEEVGRDDTRIPVLFKNQL
Sbjct: 61  QLMQQHRGMSAVMLNGAADMAGPRQAKAAEVDQALAALAGALEEVGRDDTRIPVLFKNQL 120

Query: 121 AAWTKVRDAVASRSITPPESFAAHSAAIAALFDLNERLLDYYHYTIDPDFDSTQLINAAF 180
           AAWTKVRDAVASRSITPPESFAAHSAAIAALFDLNERLLDYYHYTIDPDFDSTQLINAAF
Sbjct: 121 AAWTKVRDAVASRSITPPESFAAHSAAIAALFDLNERLLDYYHYTIDPDFDSTQLINAAF 180

Query: 181 IAMPALTEDLGRARARGASLLLKKELKLEERLELVAMLERAQERLSSARKSFAKGVAANA 240
           IAMPALTEDLGRARARGASLLLKKELKLEERLELVAMLERAQERLSSARKSFAKGVAANA
Sbjct: 181 IAMPALTEDLGRARARGASLLLKKELKLEERLELVAMLERAQERLSSARKSFAKGVAANA 240

Query: 241 EIGVKLGSTFEKADRLGNEVIKLTREQVLLPQELSFPPDAYFKQFTLAIDEQFKAIGEVT 300
           EIGVKLGSTFEKADRLGNEV+KLTREQVLLPQELSFPPDAYFKQFTLAIDEQFKAIGEVT
Sbjct: 241 EIGVKLGSTFEKADRLGNEVMKLTREQVLLPQELSFPPDAYFKQFTLAIDEQFKAIGEVT 300

Query: 301 EVLAXE 306
           EVLA +
Sbjct: 301 EVLAGQ 306


>gi|300312840|ref|YP_003776932.1| methyl-accepting chemotaxis I
           protein [Herbaspirillum seropedicae SmR1]
          Length = 646

 Score =  107 bits (267), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/293 (30%), Positives = 141/293 (48%), Gaps = 3/293 (1%)

Query: 1   MGQLLANLKLWQKFALLGLLGLVLFGVPTTLYFNSTERVIRFKQQEIAGVEPVRRLLRSV 60
           M  L+ +L+  +KFAL+G L  +LF VPTTL   S  + +   ++E   VEP R LL  +
Sbjct: 1   MRSLINHLRFSRKFALIGALAFLLFIVPTTLLVRSNLQDLAIAEREQLAVEPGRDLLLML 60

Query: 61  QLMQQHRGMSAVMLNGAADMAGPRQAKAAEVDQALAALAGALEEVGRDDTRIPVLFKNQL 120
           + MQQHRG+SA+ L+     A  R  +  +V+  L  +   +  +   D  +    +   
Sbjct: 61  KQMQQHRGLSALYLSDTNAGAADRAERQKQVEATLERVRTGI--LPLQDKELMESLERVA 118

Query: 121 AAWTKVRDAVASRSITPPESFAAHSAAIAALFDLNERLLDYYHYTIDPDFDSTQLINAAF 180
           + W  +  AV+S++IT  +S   H+  IA   DL ++L +     ++ +     +  A  
Sbjct: 119 SQWRALAQAVSSKAITGAQSNLQHAELIALELDLIDQLANSSGLALEAEAALFYVQRAVM 178

Query: 181 IAMPALTEDLGRARARGASLLLKKELKLEERLELVAMLERAQERLSSARKSFAKGVAANA 240
             +P LTE LG+ RARGA +L + +   EER  L  + +RA+    SARKS       +A
Sbjct: 179 NELPQLTEALGQTRARGAVMLGRGQASAEERARLENLADRARRSYDSARKSLTLAAGRHA 238

Query: 241 EIGVKLGSTFEKADRLGNEVIKLTREQVLLPQELSFPPDAYFKQFTLAIDEQF 293
            +   L     +A +   E  KL    ++    LS P   +    T  ID QF
Sbjct: 239 -LPANLERARAEALKAAEEGFKLADSAIIRADNLSMPAPEWVATMTRIIDTQF 290


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 792,046
Number of extensions: 23226
Number of successful extensions: 103
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 2
Length of query: 365
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 279
Effective length of database: 1,212,660
Effective search space: 338332140
Effective search space used: 338332140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)