BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0272.p (543 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310582|ref|YP_003774674.1| methyl-accepting chemotaxis I p... 1068 0.0 gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis tra... 353 2e-98 gi|300312840|ref|YP_003776932.1| methyl-accepting chemotaxis I p... 350 1e-97 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 350 2e-97 gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sen... 346 2e-96 >gi|300310582|ref|YP_003774674.1| methyl-accepting chemotaxis I protein [Herbaspirillum seropedicae SmR1] Length = 668 Score = 1068 bits (2762), Expect = 0.0, Method: Compositional matrix adjust. Identities = 541/543 (99%), Positives = 542/543 (99%) Query: 1 VRDAVASRSITPPESFAAHSAAIAALFDLNERLLDYYHYTIDPDFDSTQLINAAFIAMPA 60 VRDAVASRSITPPESFAAHSAAIAALFDLNERLLDYYHYTIDPDFDSTQLINAAFIAMPA Sbjct: 126 VRDAVASRSITPPESFAAHSAAIAALFDLNERLLDYYHYTIDPDFDSTQLINAAFIAMPA 185 Query: 61 LTEDLGRARARGASLLLKKELKLEERLELVAMLERAQERLSSARKSFAKGVAANAEIGVK 120 LTEDLGRARARGASLLLKKELKLEERLELVAMLERAQERLSSARKSFAKGVAANAEIGVK Sbjct: 186 LTEDLGRARARGASLLLKKELKLEERLELVAMLERAQERLSSARKSFAKGVAANAEIGVK 245 Query: 121 LGSTFEKADRLGNEVIKLTREQVLLPQELSFPPDAYFKQFTLAIDEQFKAIGEVTEVLAG 180 LGSTFEKADRLGNEV+KLTREQVLLPQELSFPPDAYFKQFTLAIDEQFKAIGEVTEVLAG Sbjct: 246 LGSTFEKADRLGNEVMKLTREQVLLPQELSFPPDAYFKQFTLAIDEQFKAIGEVTEVLAG 305 Query: 181 QLDAQNAALRREQLTVLGAIFALALLVAWLGVMITRSVTQPILASVAMAGRVADYDLTAR 240 QLD QNAALRREQLTVLGAIFALALLVAWLGVMITRSVTQPILASVAMAGRVADYDLTAR Sbjct: 306 QLDTQNAALRREQLTVLGAIFALALLVAWLGVMITRSVTQPILASVAMAGRVADYDLTAR 365 Query: 241 SVAQGRDESAQLLGSLNAMTASLGGIVGRVRTSIEVIQHASREIATGNADLSRRTESQAS 300 SVAQGRDESAQLLGSLNAMTASLGGIVGRVRTSIEVIQHASREIATGNADLSRRTESQAS Sbjct: 366 SVAQGRDESAQLLGSLNAMTASLGGIVGRVRTSIEVIQHASREIATGNADLSRRTESQAS 425 Query: 301 SLEETASAMEELTSTVQNNAENARQADQLAGSASRLAERGGEVVSNVVQTMDEIKTSSRR 360 SLEETASAMEELTSTVQNNAENARQADQLAGSASRLAERGGEVVSNVVQTMDEIKTSSRR Sbjct: 426 SLEETASAMEELTSTVQNNAENARQADQLAGSASRLAERGGEVVSNVVQTMDEIKTSSRR 485 Query: 361 IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKEL 420 IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKEL Sbjct: 486 IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKEL 545 Query: 421 ISDSVDKVDAGGRLVDEAGMTMGEIVNSVRQVAGIMSEITQASQEQSTGIGQVNDAITQM 480 ISDSVDKVDAGGRLVDEAGMTMGEIVNSVRQVAGIMSEITQASQEQSTGIGQVNDAITQM Sbjct: 546 ISDSVDKVDAGGRLVDEAGMTMGEIVNSVRQVAGIMSEITQASQEQSTGIGQVNDAITQM 605 Query: 481 EAITQQNAALVEEAAAAAESLQQQAEMLWDEVGVFKTEGAAGGAPDGLPPVAPRSAALRL 540 EAITQQNAALVEEAAAAAESLQQQAEMLWDEVGVFKTEGAAGGAPDGLPPVAPRSAALRL Sbjct: 606 EAITQQNAALVEEAAAAAESLQQQAEMLWDEVGVFKTEGAAGGAPDGLPPVAPRSAALRL 665 Query: 541 APA 543 APA Sbjct: 666 APA 668 >gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 353 bits (906), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 228/367 (62%), Positives = 267/367 (72%), Gaps = 8/367 (2%) Query: 181 QLDAQNAALRREQLTVLGAIFALALLVAWLGVMITRSVTQPILASVAMAGRVADYDLTAR 240 Q DA A R + + A LA+L L V ++R + +P+ +V++A RVA DLT R Sbjct: 181 QADAIYAQARLWIIVTVAACIGLAML---LAVWVSRLIARPLEEAVSVAQRVAGGDLTTR 237 Query: 241 SVAQGRDESAQLLGSLNAMTASLGGIVGRVRTSIEVIQHASREIATGNADLSRRTESQAS 300 G+DE+ QLL +L +M SL GIVG+VR + I AS EIA+GN DLS RTE QAS Sbjct: 238 IEPAGKDETGQLLVALKSMNDSLVGIVGQVRMGTQTITTASTEIASGNLDLSSRTEEQAS 297 Query: 301 SLEETASAMEELTSTVQNNAENARQADQLAGSASRLAERGGEVVSNVVQTMDEIKTSSRR 360 SLEETASAMEELTSTV+ NA+NARQA+QLA SAS +A +GG VV+ VV TM I SSR+ Sbjct: 298 SLEETASAMEELTSTVKQNADNARQANQLAVSASEVASQGGAVVNQVVDTMGSINASSRK 357 Query: 361 IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKEL 420 I DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIKEL Sbjct: 358 IADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKEL 417 Query: 421 ISDSVDKVDAGGRLVDEAGMTMGEIVNSVRQVAGIMSEITQASQEQSTGIGQVNDAITQM 480 I SV +VD G +LV+ AG+TM E+V SVR+V I+ EI+ ASQEQS GI QVN AI QM Sbjct: 418 IEGSVAQVDMGSKLVERAGITMSEVVQSVRRVTDIVGEISSASQEQSEGIEQVNLAIAQM 477 Query: 481 EAITQQNAALVEEAAAAAESLQQQAEMLWDEVGVFKTEGAAGGAPDGLPPV----APRSA 536 + +TQQNAALVEEAAAAA+SLQ+QAE L VG FK E P PPV R+A Sbjct: 478 DEVTQQNAALVEEAAAAAQSLQEQAETLTQTVGFFKLEQQP-DEPASRPPVRAASVARTA 536 Query: 537 ALRLAPA 543 A+R APA Sbjct: 537 AVRHAPA 543 >gi|300312840|ref|YP_003776932.1| methyl-accepting chemotaxis I protein [Herbaspirillum seropedicae SmR1] Length = 646 Score = 350 bits (899), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 240/513 (46%), Positives = 319/513 (62%), Gaps = 1/513 (0%) Query: 4 AVASRSITPPESFAAHSAAIAALFDLNERLLDYYHYTIDPDFDSTQLINAAFIAMPALTE 63 AV+S++IT +S H+ IA DL ++L + ++ + + A +P LTE Sbjct: 127 AVSSKAITGAQSNLQHAELIALELDLIDQLANSSGLALEAEAALFYVQRAVMNELPQLTE 186 Query: 64 DLGRARARGASLLLKKELKLEERLELVAMLERAQERLSSARKSFAKGVAANAEIGVKLGS 123 LG+ RARGA +L + + EER L + +RA+ SARKS +A + L Sbjct: 187 ALGQTRARGAVMLGRGQASAEERARLENLADRARRSYDSARKSLTLAAGRHA-LPANLER 245 Query: 124 TFEKADRLGNEVIKLTREQVLLPQELSFPPDAYFKQFTLAIDEQFKAIGEVTEVLAGQLD 183 +A + E KL ++ LS P + T ID QF + +++ +L Sbjct: 246 ARAEALKAAEEGFKLADSAIIRADNLSMPAPEWVATMTRIIDTQFVLVNASFDLMRDELQ 305 Query: 184 AQNAALRREQLTVLGAIFALALLVAWLGVMITRSVTQPILASVAMAGRVADYDLTARSVA 243 A+ +R E L + + LA W+ V ITR+ T I +V + ++ DLT Sbjct: 306 AKIPRVRNELLMLCALLGLLAAAALWVMVAITRATTSAINDAVRLTEAISAGDLTQHVQI 365 Query: 244 QGRDESAQLLGSLNAMTASLGGIVGRVRTSIEVIQHASREIATGNADLSRRTESQASSLE 303 G DE A+LL ++ AMTA L +V VR++ E + AS +IA GNADLS+RTE QAS+L+ Sbjct: 366 NGSDEVARLLTAMQAMTARLSTVVSSVRSNSESVATASAQIAQGNADLSKRTEEQASALQ 425 Query: 304 ETASAMEELTSTVQNNAENARQADQLAGSASRLAERGGEVVSNVVQTMDEIKTSSRRIVD 363 +TA++MEEL STV NA+ ARQA LA A+ +A +GG+VV VVQTM + SS RI D Sbjct: 426 QTAASMEELGSTVAQNADGARQAGDLAREAAHVAGQGGQVVQQVVQTMQGLHASSDRISD 485 Query: 364 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKELISD 423 II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA+AA+EIKELI+ Sbjct: 486 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSATAAREIKELITA 545 Query: 424 SVDKVDAGGRLVDEAGMTMGEIVNSVRQVAGIMSEITQASQEQSTGIGQVNDAITQMEAI 483 SV++V G +L D+AG TM EIV S+R+V+ IM I A+ EQ+TGI QV A+TQM+ Sbjct: 546 SVEQVGQGTQLADQAGKTMEEIVTSIRRVSDIMVGINAATAEQNTGIAQVGQAVTQMDTT 605 Query: 484 TQQNAALVEEAAAAAESLQQQAEMLWDEVGVFK 516 TQQNAALVEE+AAAA SL QA L V VF+ Sbjct: 606 TQQNAALVEESAAAAISLSGQARELVQAVAVFR 638 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 350 bits (898), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 213/329 (64%), Positives = 248/329 (75%), Gaps = 4/329 (1%) Query: 191 REQLTVLGAI-FALALLVAWLGVMITRSVTQPILASVAMAGRVADYDLTARSVAQGRDES 249 R L LGAI L +AWL +TRS+T+P+ +V +A VA DLT+R + RDE+ Sbjct: 187 RSMLLALGAIEIVLGAALAWL---LTRSITRPLNQAVTIAETVAAGDLTSRIDSSSRDET 243 Query: 250 AQLLGSLNAMTASLGGIVGRVRTSIEVIQHASREIATGNADLSRRTESQASSLEETASAM 309 +LL +L M +L IVGRVR E I ASREIATGN DLS RTE+QA SLEETASAM Sbjct: 244 GKLLAALKTMNGNLLDIVGRVRMGTETINTASREIATGNLDLSARTEAQAGSLEETASAM 303 Query: 310 EELTSTVQNNAENARQADQLAGSASRLAERGGEVVSNVVQTMDEIKTSSRRIVDIISVID 369 E+LTSTV+ NA+NARQA++LA SAS++A +GG VV VV TM I SS++I DII VID Sbjct: 304 EQLTSTVKQNADNARQANELAASASQVATQGGAVVDQVVATMGAIHASSQKIADIIGVID 363 Query: 370 GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKELISDSVDKVD 429 GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIK+LI DSV+KVD Sbjct: 364 GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDDSVEKVD 423 Query: 430 AGGRLVDEAGMTMGEIVNSVRQVAGIMSEITQASQEQSTGIGQVNDAITQMEAITQQNAA 489 G RLV AG TM E+V SV +V ++ EIT ASQEQS GI QVN AIT ++ TQQNAA Sbjct: 424 DGSRLVARAGDTMQEVVQSVARVTAVVREITLASQEQSDGIEQVNLAITHIDETTQQNAA 483 Query: 490 LVEEAAAAAESLQQQAEMLWDEVGVFKTE 518 LVE+AAAAA S+Q QA L D V VF+ E Sbjct: 484 LVEQAAAAARSMQDQAASLTDAVSVFRLE 512 >gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sensory transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 585 Score = 346 bits (888), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 221/364 (60%), Positives = 269/364 (73%), Gaps = 9/364 (2%) Query: 178 LAGQLDAQNAALRREQLTVL---GAI-FALALLVAWLGVMITRSVTQPILASVAMAGRVA 233 L G+ + AALR T L GAI LA+L+AW + ++T+P+ +V +A RVA Sbjct: 176 LLGERAEEAAALRSVTSTTLIGGGAIALMLAVLLAW---WLANNITRPLALAVQLARRVA 232 Query: 234 DYDLTARSVAQGRDESAQLLGSLNAMTASLGGIVGRVRTSIEVIQHASREIATGNADLSR 293 DLTAR + RDE+ LLG+L M SL IV VR E+I AS EIATGN DLS Sbjct: 233 SGDLTARIEVRSRDETGALLGALKDMNESLVRIVSGVRRGTEMIATASSEIATGNLDLSS 292 Query: 294 RTESQASSLEETASAMEELTSTVQNNAENARQADQLAGSASRLAERGGEVVSNVVQTMDE 353 RTE QASSLEETAS+MEELTSTVQ N NAR+A+++A +AS +A GG VV+ VV TM+E Sbjct: 293 RTEQQASSLEETASSMEELTSTVQQNTANAREANRMAQAASDIASSGGGVVARVVDTMEE 352 Query: 354 IKTSSRRIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASA 413 I SSR+IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA+A Sbjct: 353 INDSSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAA 412 Query: 414 AKEIKELISDSVDKVDAGGRLVDEAGMTMGEIVNSVRQVAGIMSEITQASQEQSTGIGQV 473 AKEIK LISDSV KV++G LV+EAG TM EIV SV++V +++EI+ A +EQ +GI QV Sbjct: 413 AKEIKALISDSVAKVESGSLLVNEAGDTMREIVESVQRVTNMINEISAAGEEQRSGIEQV 472 Query: 474 NDAITQMEAITQQNAALVEEAAAAAESLQQQAEMLWDEVGVFKTEGAAGGAPDGLPPVAP 533 + A+ QM+ +TQQNAALVE+AAAA++SLQ+QA+ L V VF+ E AG A + P AP Sbjct: 473 SQAVGQMDQVTQQNAALVEQAAAASQSLQEQAQELAQAVSVFRLE--AGQALEVAPEPAP 530 Query: 534 RSAA 537 S A Sbjct: 531 ASVA 534 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.127 0.331 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,156,312 Number of extensions: 39804 Number of successful extensions: 521 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 251 Number of HSP's successfully gapped: 71 Length of query: 543 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 453 Effective length of database: 1,193,720 Effective search space: 540755160 Effective search space used: 540755160 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 133 (55.8 bits)