BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0268.p
         (704 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310586|ref|YP_003774678.1| polyphosphate kinase [Herbaspir...  1447   0.0  

>gi|300310586|ref|YP_003774678.1| polyphosphate kinase
           [Herbaspirillum seropedicae SmR1]
          Length = 704

 Score = 1447 bits (3747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 703/704 (99%), Positives = 704/704 (100%)

Query: 1   MTRKVKPESSTQPELPVNTIYLNRELSQLAFNRRVLAQAEDDSVPLLERLRYLCICSSNL 60
           MTRKVKPESSTQP+LPVNTIYLNRELSQLAFNRRVLAQAEDDSVPLLERLRYLCICSSNL
Sbjct: 1   MTRKVKPESSTQPDLPVNTIYLNRELSQLAFNRRVLAQAEDDSVPLLERLRYLCICSSNL 60

Query: 61  DEFFEVRIASLLANRIEGENIDPPELRAALERTSAECHRIVARQYELLNEEILPQLAANG 120
           DEFFEVRIASLLANRIEGENIDPPELRAALERTSAECHRIVARQYELLNEEILPQLAANG
Sbjct: 61  DEFFEVRIASLLANRIEGENIDPPELRAALERTSAECHRIVARQYELLNEEILPQLAANG 120

Query: 121 IHLLRHDDRNDAQRAWVKQYFEQHVRPLLTPIGLDPAHPFPQVHNKSLNFIIELSGKDAF 180
           IHLLRHDDRNDAQRAWVKQYFEQHVRPLLTPIGLDPAHPFPQVHNKSLNFIIELSGKDAF
Sbjct: 121 IHLLRHDDRNDAQRAWVKQYFEQHVRPLLTPIGLDPAHPFPQVHNKSLNFIIELSGKDAF 180

Query: 181 GRGTGIVIIKAPRVLPRVIKLPDHLSAKGQSSFCLLSSVIHAHIADLFPGRDITAYSQFR 240
           GRGTGIVIIKAPRVLPRVIKLPDHLSAKGQSSFCLLSSVIHAHIADLFPGRDITAYSQFR
Sbjct: 181 GRGTGIVIIKAPRVLPRVIKLPDHLSAKGQSSFCLLSSVIHAHIADLFPGRDITAYSQFR 240

Query: 241 VTRNSDLWVDEEEVKNLRQALETELQSRQFGVAVRLEVAANCPEHLAQLLLNQFNIERNR 300
           VTRNSDLWVDEEEVKNLRQALETELQSRQFGVAVRLEVAANCPEHLAQLLLNQFNIERNR
Sbjct: 241 VTRNSDLWVDEEEVKNLRQALETELQSRQFGVAVRLEVAANCPEHLAQLLLNQFNIERNR 300

Query: 301 LYAVQGPVNMVRLGEIVNLVNQPELRFPPFSPTLPPQLASENIFAALDKKDVLLHHPFQS 360
           LYAVQGPVNMVRLGEIVNLVNQPELRFPPFSPTLPPQLASENIFAALDKKDVLLHHPFQS
Sbjct: 301 LYAVQGPVNMVRLGEIVNLVNQPELRFPPFSPTLPPQLASENIFAALDKKDVLLHHPFQS 360

Query: 361 FQPVVDFIRTAAHDPGVLAIKQTIYRTGMNSDLMEALIYAAQHGKEVTVIVELMARFDEE 420
           FQPVVDFIRTAAHDPGVLAIKQTIYRTGMNSDLMEALIYAAQHGKEVTVIVELMARFDEE
Sbjct: 361 FQPVVDFIRTAAHDPGVLAIKQTIYRTGMNSDLMEALIYAAQHGKEVTVIVELMARFDEE 420

Query: 421 ANINWAVKLEQAGAQVVYGVVGLKTHAKLALVIRRDEDQGLRFYAHLGTGNYHPNTTKFY 480
           ANINWAVKLEQAGAQVVYGVVGLKTHAKLALVIRRDEDQGLRFYAHLGTGNYHPNTTKFY
Sbjct: 421 ANINWAVKLEQAGAQVVYGVVGLKTHAKLALVIRRDEDQGLRFYAHLGTGNYHPNTTKFY 480

Query: 481 TDFGLLTSNQELTAEVNEVFIHLTSLTKPRNLTHLWLAPFSLQKEIIRAIRNEGQIAREG 540
           TDFGLLTSNQELTAEVNEVFIHLTSLTKPRNLTHLWLAPFSLQKEIIRAIRNEGQIAREG
Sbjct: 481 TDFGLLTSNQELTAEVNEVFIHLTSLTKPRNLTHLWLAPFSLQKEIIRAIRNEGQIAREG 540

Query: 541 RPARIIAKMNALLDESVIRALYAASADGVKIDLIVRGACALRPGVPGLSENIKVRSIIGR 600
           RPARIIAKMNALLDESVIRALYAASADGVKIDLIVRGACALRPGVPGLSENIKVRSIIGR
Sbjct: 541 RPARIIAKMNALLDESVIRALYAASADGVKIDLIVRGACALRPGVPGLSENIKVRSIIGR 600

Query: 601 YLEHSRIYYFRNDLAHDVYLASADWMNRNLFRRIEVAFPVLDKSLKKRVISEGLNPYLKD 660
           YLEHSRIYYFRNDLAHDVYLASADWMNRNLFRRIEVAFPVLDKSLKKRVISEGLNPYLKD
Sbjct: 601 YLEHSRIYYFRNDLAHDVYLASADWMNRNLFRRIEVAFPVLDKSLKKRVISEGLNPYLKD 660

Query: 661 NTHSWHLDINGVYTQKKPRSRQQTFNAQQYLMNTLGIPATPPEE 704
           NTHSWHLDINGVYTQKKPRSRQQTFNAQQYLMNTLGIPATPPEE
Sbjct: 661 NTHSWHLDINGVYTQKKPRSRQQTFNAQQYLMNTLGIPATPPEE 704


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,127,278
Number of extensions: 86777
Number of successful extensions: 237
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 237
Number of HSP's successfully gapped: 1
Length of query: 704
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 612
Effective length of database: 1,184,250
Effective search space: 724761000
Effective search space used: 724761000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 134 (56.2 bits)