BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0266.p
         (345 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310588|ref|YP_003774680.1| phosphate ABC transporter perme...   619   e-178
gi|300310589|ref|YP_003774681.1| phosphate ABC transporter perme...    66   5e-12

>gi|300310588|ref|YP_003774680.1| phosphate ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 313

 Score =  619 bits (1595), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 313/313 (100%), Positives = 313/313 (100%)

Query: 33  MAVMRRQRLQDFFFHKITLIFALSVLLMLGGIIVSLIIGAAPAFQAFGPGFITRVEWDPT 92
           MAVMRRQRLQDFFFHKITLIFALSVLLMLGGIIVSLIIGAAPAFQAFGPGFITRVEWDPT
Sbjct: 1   MAVMRRQRLQDFFFHKITLIFALSVLLMLGGIIVSLIIGAAPAFQAFGPGFITRVEWDPT 60

Query: 93  NNEFGAMIAIVGTLSTSIIALLIAFPVSFGIALFLTEICPAKLRRPLGTCVELLAGVPSI 152
           NNEFGAMIAIVGTLSTSIIALLIAFPVSFGIALFLTEICPAKLRRPLGTCVELLAGVPSI
Sbjct: 61  NNEFGAMIAIVGTLSTSIIALLIAFPVSFGIALFLTEICPAKLRRPLGTCVELLAGVPSI 120

Query: 153 IYGMWGLFVFAPLFSEYGQPFLKATLGQIPGIGVLFSGPTMGIGILTAGLILSVMIIPFI 212
           IYGMWGLFVFAPLFSEYGQPFLKATLGQIPGIGVLFSGPTMGIGILTAGLILSVMIIPFI
Sbjct: 121 IYGMWGLFVFAPLFSEYGQPFLKATLGQIPGIGVLFSGPTMGIGILTAGLILSVMIIPFI 180

Query: 213 SSVMRDVFEVVPAVLKESAYGLGCTRWEVVRKVVLPYTKTGVVGGVMLGLGRALGETMAV 272
           SSVMRDVFEVVPAVLKESAYGLGCTRWEVVRKVVLPYTKTGVVGGVMLGLGRALGETMAV
Sbjct: 181 SSVMRDVFEVVPAVLKESAYGLGCTRWEVVRKVVLPYTKTGVVGGVMLGLGRALGETMAV 240

Query: 273 TFVIGNSHRLSWSLFSAGNSIASTLANEIAEASSKLHVSSLFALGLILFVITFIVLSAAK 332
           TFVIGNSHRLSWSLFSAGNSIASTLANEIAEASSKLHVSSLFALGLILFVITFIVLSAAK
Sbjct: 241 TFVIGNSHRLSWSLFSAGNSIASTLANEIAEASSKLHVSSLFALGLILFVITFIVLSAAK 300

Query: 333 IMLMGMTRKEGAK 345
           IMLMGMTRKEGAK
Sbjct: 301 IMLMGMTRKEGAK 313


>gi|300310589|ref|YP_003774681.1| phosphate ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 298

 Score = 65.9 bits (159), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 122/279 (43%), Gaps = 43/279 (15%)

Query: 10  MSNTEVKKSTTDTESAQVAREKLMAVMRRQRLQDFFFHKITLIFALSV----LLMLGGII 65
           MS T V+      + AQ      M  + R+RL     H++ ++F+       L +L  I+
Sbjct: 1   MSQT-VQAGVQHADQAQA-----MNPVYRKRLMQ---HRMGMLFSFLAMGLGLFVLAWIL 51

Query: 66  VSLIIGAAPAFQAFGPGFITRVEWDPTNNEFGAMIAIVGTLSTSIIALLIAFPVSFGIAL 125
           ++L+     A      G +T     P +   G +  IVG+L    I+ LI+ P+     +
Sbjct: 52  LTLVFKGVAALNL---GLLTENTPGPGDAGGGLLNPIVGSLMMVGISTLISTPIGILAGV 108

Query: 126 FLTEICP-AKLRRPLGTCVELLAGVPSIIYGMWGLFVFAPLFSEYGQPFLKATLGQIPGI 184
           +L E    +KL +      +++   PSI+ G   LF++A   +  G              
Sbjct: 109 YLAEYGEESKLAQVTRFVTDIMLSAPSIVIG---LFIYAIYVANVGH------------- 152

Query: 185 GVLFSGPTMGIGILTAGLILSVMIIPFISSVMRDVFEVVPAVLKESAYGLGCTRWEVVRK 244
              FSG             +S++ IP +     ++ ++VP+ L+E+A+ LG  RW+V   
Sbjct: 153 ---FSG-------WAGTFAISLIAIPVVVRTTDNMLKLVPSGLREAAFALGAPRWKVAII 202

Query: 245 VVLPYTKTGVVGGVMLGLGRALGETMAVTFVIGNSHRLS 283
           V L   K GVV GV+L + R  GET  + F   N+   S
Sbjct: 203 VRLRAVKAGVVTGVLLAVARISGETAPLLFTALNNQFFS 241


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.139    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 838,282
Number of extensions: 30356
Number of successful extensions: 194
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 3
Length of query: 345
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 259
Effective length of database: 1,212,660
Effective search space: 314078940
Effective search space used: 314078940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)