BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0265.p
         (298 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310589|ref|YP_003774681.1| phosphate ABC transporter perme...   590   e-170
gi|300310588|ref|YP_003774680.1| phosphate ABC transporter perme...    64   2e-11

>gi|300310589|ref|YP_003774681.1| phosphate ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 298

 Score =  590 bits (1521), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 298/298 (100%), Positives = 298/298 (100%)

Query: 1   MSQTVQAGVQHADQAQAMNPVYRKRLMQHRMGMLFSFLAMGLGLFVLAWILLTLVFKGVA 60
           MSQTVQAGVQHADQAQAMNPVYRKRLMQHRMGMLFSFLAMGLGLFVLAWILLTLVFKGVA
Sbjct: 1   MSQTVQAGVQHADQAQAMNPVYRKRLMQHRMGMLFSFLAMGLGLFVLAWILLTLVFKGVA 60

Query: 61  ALNLGLLTENTPGPGDAGGGLLNPIVGSLMMVGISTLISTPIGILAGVYLAEYGEESKLA 120
           ALNLGLLTENTPGPGDAGGGLLNPIVGSLMMVGISTLISTPIGILAGVYLAEYGEESKLA
Sbjct: 61  ALNLGLLTENTPGPGDAGGGLLNPIVGSLMMVGISTLISTPIGILAGVYLAEYGEESKLA 120

Query: 121 QVTRFVTDIMLSAPSIVIGLFIYAIYVANVGHFSGWAGTFAISLIAIPVVVRTTDNMLKL 180
           QVTRFVTDIMLSAPSIVIGLFIYAIYVANVGHFSGWAGTFAISLIAIPVVVRTTDNMLKL
Sbjct: 121 QVTRFVTDIMLSAPSIVIGLFIYAIYVANVGHFSGWAGTFAISLIAIPVVVRTTDNMLKL 180

Query: 181 VPSGLREAAFALGAPRWKVAIIVRLRAVKAGVVTGVLLAVARISGETAPLLFTALNNQFF 240
           VPSGLREAAFALGAPRWKVAIIVRLRAVKAGVVTGVLLAVARISGETAPLLFTALNNQFF
Sbjct: 181 VPSGLREAAFALGAPRWKVAIIVRLRAVKAGVVTGVLLAVARISGETAPLLFTALNNQFF 240

Query: 241 STNMNRPIANLPVVINQFAMSPYDNWVSLAWGGALLITFSVLLLNVLSRTLFKQQIPG 298
           STNMNRPIANLPVVINQFAMSPYDNWVSLAWGGALLITFSVLLLNVLSRTLFKQQIPG
Sbjct: 241 STNMNRPIANLPVVINQFAMSPYDNWVSLAWGGALLITFSVLLLNVLSRTLFKQQIPG 298


>gi|300310588|ref|YP_003774680.1| phosphate ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 313

 Score = 63.5 bits (153), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 114/256 (44%), Gaps = 37/256 (14%)

Query: 18  MNPVYRKRLMQ---HRMGMLFSFLAMGLGLFVLAWILLTLVFKGVAALNL---GLLTENT 71
           M  + R+RL     H++ ++F+       L +L  I+++L+     A      G +T   
Sbjct: 1   MAVMRRQRLQDFFFHKITLIFALSV----LLMLGGIIVSLIIGAAPAFQAFGPGFITRVE 56

Query: 72  PGPGDAGGGLLNPIVGSLMMVGISTLISTPIGILAGVYLAEYGEESKLAQVTRFVTDIML 131
             P +   G +  IVG+L    I+ LI+ P+     ++L E    +KL +      +++ 
Sbjct: 57  WDPTNNEFGAMIAIVGTLSTSIIALLIAFPVSFGIALFLTEICP-AKLRRPLGTCVELLA 115

Query: 132 SAPSIVIG---LFIYAIYVANVGH----------------FSG-------WAGTFAISLI 165
             PSI+ G   LF++A   +  G                 FSG             +S++
Sbjct: 116 GVPSIIYGMWGLFVFAPLFSEYGQPFLKATLGQIPGIGVLFSGPTMGIGILTAGLILSVM 175

Query: 166 AIPVVVRTTDNMLKLVPSGLREAAFALGAPRWKVAIIVRLRAVKAGVVTGVLLAVARISG 225
            IP +     ++ ++VP+ L+E+A+ LG  RW+V   V L   K GVV GV+L + R  G
Sbjct: 176 IIPFISSVMRDVFEVVPAVLKESAYGLGCTRWEVVRKVVLPYTKTGVVGGVMLGLGRALG 235

Query: 226 ETAPLLFTALNNQFFS 241
           ET  + F   N+   S
Sbjct: 236 ETMAVTFVIGNSHRLS 251


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.139    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 901,827
Number of extensions: 38169
Number of successful extensions: 224
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 3
Length of query: 298
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 213
Effective length of database: 1,217,395
Effective search space: 259305135
Effective search space used: 259305135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)