BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0262.p (225 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310592|ref|YP_003774684.1| phosphate regulon two-component... 456 e-130 gi|300310718|ref|YP_003774810.1| phosphate regulon two-component... 255 2e-69 gi|300313896|ref|YP_003777988.1| two component transcription res... 145 2e-36 gi|300313665|ref|YP_003777757.1| two component transcription reg... 144 8e-36 gi|300310849|ref|YP_003774941.1| two component transcription reg... 141 5e-35 >gi|300310592|ref|YP_003774684.1| phosphate regulon two-component response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 245 Score = 456 bits (1172), Expect = e-130, Method: Compositional matrix adjust. Identities = 225/225 (100%), Positives = 225/225 (100%) Query: 1 MTTILIVEDEPSIAELIAFTLKEAGWSSFVVSNAAAAWDFVQHRAPQLVLLDWMLPDRSG 60 MTTILIVEDEPSIAELIAFTLKEAGWSSFVVSNAAAAWDFVQHRAPQLVLLDWMLPDRSG Sbjct: 21 MTTILIVEDEPSIAELIAFTLKEAGWSSFVVSNAAAAWDFVQHRAPQLVLLDWMLPDRSG 80 Query: 61 LHLLSRIRADRQLQQLSVIMLTAKSMEEDKIAGLDNGADDYITKPFSPRELTARIKALLR 120 LHLLSRIRADRQLQQLSVIMLTAKSMEEDKIAGLDNGADDYITKPFSPRELTARIKALLR Sbjct: 81 LHLLSRIRADRQLQQLSVIMLTAKSMEEDKIAGLDNGADDYITKPFSPRELTARIKALLR 140 Query: 121 RKSPEHAQEVMSAGPITLDPASCSVSLSGARIDIGHAEYKLLKFFLAHPDRVFSRSQLLD 180 RKSPEHAQEVMSAGPITLDPASCSVSLSGARIDIGHAEYKLLKFFLAHPDRVFSRSQLLD Sbjct: 141 RKSPEHAQEVMSAGPITLDPASCSVSLSGARIDIGHAEYKLLKFFLAHPDRVFSRSQLLD 200 Query: 181 RVWGDHVVIEERTVDVHVLRLRKALRDAEYLIKTVRSVGYMLSTK 225 RVWGDHVVIEERTVDVHVLRLRKALRDAEYLIKTVRSVGYMLSTK Sbjct: 201 RVWGDHVVIEERTVDVHVLRLRKALRDAEYLIKTVRSVGYMLSTK 245 >gi|300310718|ref|YP_003774810.1| phosphate regulon two-component response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 230 Score = 255 bits (652), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 120/222 (54%), Positives = 167/222 (75%) Query: 4 ILIVEDEPSIAELIAFTLKEAGWSSFVVSNAAAAWDFVQHRAPQLVLLDWMLPDRSGLHL 63 IL+VEDEPSIAEL+ FT++ AG+++ + ++ A A + P +VLLDWMLPD SGL L Sbjct: 8 ILMVEDEPSIAELLRFTMQGAGFATTIATDVAQARKHIAESLPHVVLLDWMLPDSSGLVL 67 Query: 64 LSRIRADRQLQQLSVIMLTAKSMEEDKIAGLDNGADDYITKPFSPRELTARIKALLRRKS 123 L+ +R D++ L VIMLTAK MEEDK+ GL+ GADDY+TKPFSP+EL AR++ALLRRK+ Sbjct: 68 LNELRRDQRTASLPVIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQALLRRKA 127 Query: 124 PEHAQEVMSAGPITLDPASCSVSLSGARIDIGHAEYKLLKFFLAHPDRVFSRSQLLDRVW 183 PE + + I++D VS++ + + AE+KLL++ +AHP+R+FSR+QLLD+VW Sbjct: 128 PEIGSQALKYRDISIDVERRQVSVADKPVLLDQAEFKLLRYLVAHPERIFSRAQLLDKVW 187 Query: 184 GDHVVIEERTVDVHVLRLRKALRDAEYLIKTVRSVGYMLSTK 225 GDH IEERTVDVH++RLRK+L D + ++TVR +GY LS + Sbjct: 188 GDHTFIEERTVDVHIMRLRKSLGDLAHYVQTVRGMGYKLSAE 229 >gi|300313896|ref|YP_003777988.1| two component transcription response regulator protein [Herbaspirillum seropedicae SmR1] Length = 244 Score = 145 bits (366), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 90/227 (39%), Positives = 131/227 (57%), Gaps = 13/227 (5%) Query: 4 ILIVEDEPSIAELIAFTLKEAGWSSFVVSNAAAAWDFVQHRAPQLVLLDWMLPDRSGLHL 63 ILIVEDEP +AEL+ L AG+S+ V+ AA D V+ + P L+LLD MLP G + Sbjct: 18 ILIVEDEPKLAELLQKYLALAGYSARHVARGDAALDAVRAQRPDLILLDIMLPGMDGWEI 77 Query: 64 LSRIRADRQLQQLSVIMLTAKSMEEDKIAGLDNGADDYITK-PFSPRELTARIKALLRRK 122 ++R + V+MLTA++ EED++ GL+ GADDYI K PFSPRE+ AR+K++LRR Sbjct: 78 CRQLRT---FSDVPVLMLTARAEEEDRLRGLELGADDYIGKTPFSPREIVARVKSMLRRN 134 Query: 123 SPEHAQEVMSAGP----ITLDPASCSVSLSGARIDIGHAEYKLLKFFLAHPDRVFSRSQL 178 + Q+ + P + +D S+ G +++ E +LLK F + P +VFSR QL Sbjct: 135 A--LVQQRTAQAPARSLLHIDDVRHQASVRGEALNLTPLELRLLKTFASAPGQVFSREQL 192 Query: 179 LDRVWGDHVVIEERTVDVHVLRLRKALR---DAEYLIKTVRSVGYML 222 L+ + D + +R VD H+ LR+ L I+ V VGY Sbjct: 193 LNHLHDDDRSVTDRAVDTHIKNLRRKLEPCFPGHNAIQAVYGVGYCF 239 >gi|300313665|ref|YP_003777757.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 240 Score = 144 bits (362), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 87/229 (37%), Positives = 127/229 (55%), Gaps = 13/229 (5%) Query: 4 ILIVEDEPSIAELIAFTLKEAGWSSFVVSNAAAAWDFVQHRAPQLVLLDWMLPDRSGLHL 63 +LIV+D+P I L+A L+ A + F + W + +++LD M+P GL L Sbjct: 7 VLIVDDDPDIRHLLADYLEAASYRPFTAAGGQEMWRILGSERIDIIILDLMMPGEDGLEL 66 Query: 64 LSRIRADRQLQQLSVIMLTAKSMEEDKIAGLDNGADDYITKPFSPRELTARIKALLRRKS 123 +R R ++MLTA+ D+I GL+ GADDY+ KPF PREL ARIK +LRR Sbjct: 67 CRELRKKRNT---PLVMLTARGTLIDRIVGLEVGADDYLPKPFDPRELLARIKVILRRAR 123 Query: 124 --PEHAQ-----EVMSAGPITLDPASCSVSLSGARIDIGHAEYKLLKFFLAHPDRVFSRS 176 PE + + AG A ++S SG I +G ++Y++L+ L HP R SR Sbjct: 124 SFPEKLEADRVSHIHFAGWKLDTQARQAISPSGVTITLGGSDYQVLRALLEHPRRALSRD 183 Query: 177 QLLDRVWGDHVVIEERTVDVHVLRLRKALRDAEY---LIKTVRSVGYML 222 LL+ V+G + +R++DV + RLR+ L D LI+TVR+ GYML Sbjct: 184 FLLNTVYGKEAMPFDRSIDVCISRLRQQLGDNPREPALIRTVRNTGYML 232 >gi|300310849|ref|YP_003774941.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 248 Score = 141 bits (355), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 92/233 (39%), Positives = 131/233 (56%), Gaps = 13/233 (5%) Query: 2 TTILIVEDEPSIAELIAFTLKEAGWSSFVVSNAAAAWDFVQHRAPQLVLLDWMLPDRSGL 61 T IL+V+D+ I L+A L G + +N + ++ L++LD LP GL Sbjct: 8 THILVVDDDRDIRTLLAEYLDSNGLRTLTATNGSEMRRVLEESRVDLIVLDLTLPGEDGL 67 Query: 62 HLLSRIRADRQLQQLSVIMLTAKSMEEDKIAGLDNGADDYITKPFSPRELTARIKALLRR 121 L +RA + VIMLTA+ D+I GL+ GADDY+ KPF PREL ARI+++LRR Sbjct: 68 TLCRNLRA---TSSVPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLRR 124 Query: 122 KS---PEHAQEVMSAGPI---TLD-PASCSVSLSGARIDIGHAEYKLLKFFLAHPDRVFS 174 P AQ ++A TLD A V+ G + + AE++LLK FL HP+RV + Sbjct: 125 TQALPPNMAQPDVAAMRFAGWTLDLTARHLVNRDGVVVALSGAEFRLLKVFLDHPNRVLN 184 Query: 175 RSQLLDRVWGDHVVIEERTVDVHVLRLRKALRD---AEYLIKTVRSVGYMLST 224 R QLL+ G +R+VD+ + RLR+ L D +IKTVR+ GY+L+T Sbjct: 185 RDQLLELTQGRESDPFDRSVDIQISRLRQKLGDDARTPTIIKTVRNEGYVLAT 237 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.135 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 675,224 Number of extensions: 26693 Number of successful extensions: 233 Number of sequences better than 1.0e-08: 40 Number of HSP's gapped: 196 Number of HSP's successfully gapped: 40 Length of query: 225 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 143 Effective length of database: 1,231,600 Effective search space: 176118800 Effective search space used: 176118800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)