BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0252.p
         (356 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310600|ref|YP_003774692.1| acyl-CoA transferases/carnitine...   571   e-164
gi|300312971|ref|YP_003777063.1| acyl-CoA transferases/carnitine...    77   2e-15
gi|300312108|ref|YP_003776200.1| acyl-CoA transferases/carnitine...    69   7e-13

>gi|300310600|ref|YP_003774692.1| acyl-CoA transferases/carnitine
           dehydratase [Herbaspirillum seropedicae SmR1]
          Length = 469

 Score =  571 bits (1471), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 300/315 (95%), Positives = 308/315 (97%)

Query: 1   VSAFRVTDLAAAAIGAAATAATELLQASTGHLPAIQVDRRMASLWFGTSLHPLGWTMPPL 60
           VSAFRVTDLAAAAIGAAATAA ELLQASTGHLPA+ VDRRMASLWFG SLHPLGWTMPPL
Sbjct: 40  VSAFRVTDLAAAAIGAAATAAAELLQASTGHLPAVHVDRRMASLWFGASLHPLGWTMPPL 99

Query: 61  WDAIAGNYRARDRWVRLHTNAPHHREAALSVLDCAADQESVRQAVAGWDADTLEAAIVAR 120
           WDAIAGNYRARDRW+RLHTNAPHHR+AALSVLDCAADQESVRQAVAGWDADTLEAAIVAR
Sbjct: 100 WDAIAGNYRARDRWIRLHTNAPHHRQAALSVLDCAADQESVRQAVAGWDADTLEAAIVAR 159

Query: 121 GGCAAVMYSREEWAAHPQGQAVAAEPLLHVATGPRVTTRAWEPSRDRPLRGIRVLDLTRI 180
           GGCAAVMYSREEWAAHPQG+AVAAEPLLHVATG RV+TRAWEPSRDRPLRGIRVLDLTRI
Sbjct: 160 GGCAAVMYSREEWAAHPQGKAVAAEPLLHVATGARVSTRAWEPSRDRPLRGIRVLDLTRI 219

Query: 181 LAGPVATRFLAGLGAEVLRIDPYGWEEPNTVPEVVLGKRCARLNLKDPTDLETLRRLMAH 240
           LAGPVATRFLAGLGAEVLRIDPYGWEEPNTVPEVVLGKRCARLNLKDP DL+TLRRLM H
Sbjct: 220 LAGPVATRFLAGLGAEVLRIDPYGWEEPNTVPEVVLGKRCARLNLKDPADLDTLRRLMGH 279

Query: 241 ADILVHGYRSDALAKLGLDAAQRRELNPALIDVSLDAYGWSGAWQCRRGFDSLIQMSTGI 300
           ADILVHGYRSDALAKLGLDAAQRRELNPALIDVSLDAYGWSGAWQCRRGFDSLIQMSTGI
Sbjct: 280 ADILVHGYRSDALAKLGLDAAQRRELNPALIDVSLDAYGWSGAWQCRRGFDSLIQMSTGI 339

Query: 301 AEAGMRVMGSAAGID 315
           AEAGMRVMGSAA ++
Sbjct: 340 AEAGMRVMGSAAPVN 354


>gi|300312971|ref|YP_003777063.1| acyl-CoA transferases/carnitine
           dehydratase [Herbaspirillum seropedicae SmR1]
          Length = 415

 Score = 77.0 bits (188), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 75/149 (50%), Gaps = 12/149 (8%)

Query: 164 SRDRPLRGIRVLDLTRILAGPVATRFLAGLGAEVLRIDPYGWEEPNTVPEVVL------- 216
           S+  PL GI+VL+L  ++AGP  +R LA  GA+V++++  G  +P     V+        
Sbjct: 6   SKPGPLAGIKVLELGTLIAGPFCSRMLAEFGADVIKVEAPGNGDPLRQWRVLKDGTSLWW 65

Query: 217 -----GKRCARLNLKDPTDLETLRRLMAHADILVHGYRSDALAKLGLDAAQRRELNPALI 271
                 K+   LN+KD    E  R+L   AD+++  YR   L K  L     ++LNPA I
Sbjct: 66  SVQARNKKSITLNMKDERAQEIARKLALEADVIIENYRPGVLEKWKLGYEDLKQLNPATI 125

Query: 272 DVSLDAYGWSGAWQCRRGFDSLIQMSTGI 300
            V L  YG +G  +   GF ++ +   GI
Sbjct: 126 MVRLSGYGQTGPLRDLPGFGAIGESMGGI 154


>gi|300312108|ref|YP_003776200.1| acyl-CoA transferases/carnitine
           dehydratase [Herbaspirillum seropedicae SmR1]
          Length = 399

 Score = 68.6 bits (166), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 78/175 (44%), Gaps = 22/175 (12%)

Query: 167 RPLRGIRVLDLTRILAGPVATRFLAGLGAEVLRIDPYGW--------EEPNTVPEVVL-- 216
           RPL GI V+ L   +A P  TR LA LGA V++I+  G            N +    +  
Sbjct: 6   RPLEGITVISLEHAIAAPFCTRQLADLGARVIKIERPGVGDFARGYDSRVNGLSSHFVWT 65

Query: 217 --GKRCARLNLKDPTDLETLRRLMAHADILVHGYRSDALAKLGLDAAQRRELNPALIDVS 274
              K    LNLKD      + +L+  AD+LV      A A LGL A      +P LI   
Sbjct: 66  NRSKESLTLNLKDEEGRRIIDQLLQQADVLVQNLAPGAAAGLGLSAQALHARHPRLIVCD 125

Query: 275 LDAYGWSGAWQCRRGFDSLIQMSTG----------IAEAGMRVMGSAAGIDAEND 319
           +  YG  G ++ ++ +D LIQ   G          + +AG  +   AAG+ A ++
Sbjct: 126 ISGYGEDGPYRDKKAYDLLIQSEAGFLSVTGTPDDVVKAGCSIADIAAGMYAYSN 180


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.133    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,197,194
Number of extensions: 53378
Number of successful extensions: 184
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 3
Length of query: 356
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 270
Effective length of database: 1,212,660
Effective search space: 327418200
Effective search space used: 327418200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)