BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0243.p
         (149 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310618|ref|YP_003774710.1| hypothetical protein Hsero_1286...   301   2e-83
gi|300309650|ref|YP_003773742.1| hypothetical protein Hsero_0308...    72   2e-14

>gi|300310618|ref|YP_003774710.1| hypothetical protein Hsero_1286
           [Herbaspirillum seropedicae SmR1]
          Length = 166

 Score =  301 bits (771), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 149/149 (100%), Positives = 149/149 (100%)

Query: 1   MLLGLGWSALMLASAAAWAQQDGATQAAIVKVMRGEVQAQREGKTRPLAVGERLYEGDRV 60
           MLLGLGWSALMLASAAAWAQQDGATQAAIVKVMRGEVQAQREGKTRPLAVGERLYEGDRV
Sbjct: 18  MLLGLGWSALMLASAAAWAQQDGATQAAIVKVMRGEVQAQREGKTRPLAVGERLYEGDRV 77

Query: 61  LTAAASSVGFTLRDDTLISLGPNSQFLLEQFVFNEKTDEGNIAVRMVKGTLRYVSGLIGK 120
           LTAAASSVGFTLRDDTLISLGPNSQFLLEQFVFNEKTDEGNIAVRMVKGTLRYVSGLIGK
Sbjct: 78  LTAAASSVGFTLRDDTLISLGPNSQFLLEQFVFNEKTDEGNIAVRMVKGTLRYVSGLIGK 137

Query: 121 HAPERQQFSTPTATIGIRGTDFIVEVAGE 149
           HAPERQQFSTPTATIGIRGTDFIVEVAGE
Sbjct: 138 HAPERQQFSTPTATIGIRGTDFIVEVAGE 166


>gi|300309650|ref|YP_003773742.1| hypothetical protein Hsero_0308
           [Herbaspirillum seropedicae SmR1]
          Length = 254

 Score = 72.0 bits (175), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 66/115 (57%), Gaps = 2/115 (1%)

Query: 30  VKVMRGEVQAQREGKTRP-LAVGERLYEGDRVLTAAASSVGFTLRDDTLISLGPNSQFLL 88
           V  + G + A+    TR  L+V   + +GD ++T   +       D+  I L P ++  +
Sbjct: 42  VTHLSGVLTARHADGTRAVLSVKSAILQGDTLITERETYTRVKFVDNAEIVLRPGTEVAV 101

Query: 89  EQFVFNEKTDEGN-IAVRMVKGTLRYVSGLIGKHAPERQQFSTPTATIGIRGTDF 142
            +++++EK  E + +A+ +VKG LR V+GL+GK   E   F TPTATIGIRGT F
Sbjct: 102 NKYIYDEKKPENDSVAIGLVKGGLRAVTGLVGKRNHEAVNFDTPTATIGIRGTHF 156


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 397,197
Number of extensions: 14732
Number of successful extensions: 42
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 2
Length of query: 149
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 72
Effective length of database: 1,255,275
Effective search space: 90379800
Effective search space used: 90379800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)