BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0241.p (261 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310620|ref|YP_003774712.1| methyl-accepting chemotaxis tra... 486 e-139 gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sen... 273 7e-75 gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 267 8e-73 gi|300312448|ref|YP_003776540.1| methyl-accepting chemotaxis tra... 256 2e-69 gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis pro... 253 9e-69 >gi|300310620|ref|YP_003774712.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 573 Score = 486 bits (1252), Expect = e-139, Method: Compositional matrix adjust. Identities = 258/262 (98%), Positives = 258/262 (98%), Gaps = 1/262 (0%) Query: 1 MEELTSTVKHNASNAQNAKEMAATASTVAQEGGEVVAQVVDTMSAINESSRKMADIISVI 60 MEELTSTVKHNASNAQNAKEMAATASTVAQEGGEVVAQVVDTMSAINESSRKMADIISVI Sbjct: 312 MEELTSTVKHNASNAQNAKEMAATASTVAQEGGEVVAQVVDTMSAINESSRKMADIISVI 371 Query: 61 DGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEIKTLIEDSVDKV 120 DGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEIK LIEDSVDKV Sbjct: 372 DGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEIKALIEDSVDKV 431 Query: 121 TVGARLADQAGTTMSGIVENAGKVTSIIGEISAASTEQTAGIEQINQAIMQMDDVTQQNA 180 TVGARLADQAGTTMSGIVENAGKVTSIIGEISAASTEQTAGIEQINQAIMQMDDVTQQNA Sbjct: 432 TVGARLADQAGTTMSGIVENAGKVTSIIGEISAASTEQTAGIEQINQAIMQMDDVTQQNA 491 Query: 181 SLVEEAAAASRALQDQADALAQIVSIFNLGQTAIGM-DAPRTITPTAPKTIAGAPRSEPK 239 SLVEEAAAASRALQDQADALAQIVSIFNLG TAIGM DAPRTITPTAPKTIAGAPRSEPK Sbjct: 492 SLVEEAAAASRALQDQADALAQIVSIFNLGHTAIGMQDAPRTITPTAPKTIAGAPRSEPK 551 Query: 240 RLGNKAATPSAQAAKEEDWATF 261 RLGNKAAT SAQAAKEEDWATF Sbjct: 552 RLGNKAATASAQAAKEEDWATF 573 >gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 567 Score = 273 bits (699), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 156/271 (57%), Positives = 200/271 (73%), Gaps = 20/271 (7%) Query: 1 MEELTSTVKHNASNAQNAKEMAATASTVAQEGGEVVAQVVDTMSAINESSRKMADIISVI 60 MEELTSTV+ NA NA+ A ++A +AST+A+EGG+VV+QV++TM +I+ SS+K+ DIISVI Sbjct: 307 MEELTSTVRQNAENARQANQLALSASTIAEEGGKVVSQVIETMGSIDASSKKIVDIISVI 366 Query: 61 DGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEIKTLIEDSVDKV 120 D IAFQTNILALNAAVEAARAGEQGRGFAVVATEVR+LAQRSA AAKEIKTLI++SV +V Sbjct: 367 DSIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSATAAKEIKTLIDNSVQQV 426 Query: 121 TVGARLADQAGTTMSGIVENAGKVTSIIGEISAASTEQTAGIEQINQAIMQMDDVTQQNA 180 +G+ L +AG T+S +V + +VT ++ EISAAS EQT GIEQ+NQAI QMD+VTQQNA Sbjct: 427 GLGSGLVQKAGVTISEVVSSVQRVTDVMSEISAASGEQTQGIEQVNQAITQMDEVTQQNA 486 Query: 181 SLVEEAAAASRALQDQADALAQIVSIFNLGQTA--------IGMDAPRTITPTAPKTIAG 232 +LVEEAA+AS++L QA L+++V +F L A + A TP P +AG Sbjct: 487 ALVEEAASASQSLSHQAQRLSELVGVFRLPGAARQQVPEVAVVATAAPAYTPRRP-AVAG 545 Query: 233 APRSEPKRLGNKAATPSAQAAK--EEDWATF 261 A + ATP+ A+ +E W TF Sbjct: 546 ATST---------ATPALAVAQGPDEQWETF 567 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 267 bits (682), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 153/227 (67%), Positives = 181/227 (79%) Query: 1 MEELTSTVKHNASNAQNAKEMAATASTVAQEGGEVVAQVVDTMSAINESSRKMADIISVI 60 MEEL STV+ NA NA+ A ++A +AS VA++GG VV+QVVDTM AIN SSRK+ DIISVI Sbjct: 306 MEELISTVRQNADNARQASQLANSASAVAEQGGGVVSQVVDTMGAINASSRKIVDIISVI 365 Query: 61 DGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEIKTLIEDSVDKV 120 DGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR LAQRSA+AAKEIK LI DSV KV Sbjct: 366 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELINDSVGKV 425 Query: 121 TVGARLADQAGTTMSGIVENAGKVTSIIGEISAASTEQTAGIEQINQAIMQMDDVTQQNA 180 G+RL +QAG TM +V + +VT I+ EISAASTEQT GIEQIN AI QMD VTQQNA Sbjct: 426 DDGSRLVEQAGNTMQEVVSSVRRVTDIVAEISAASTEQTHGIEQINLAITQMDQVTQQNA 485 Query: 181 SLVEEAAAASRALQDQADALAQIVSIFNLGQTAIGMDAPRTITPTAP 227 +LVEEAAAA+ ++Q QA L Q+VS+F L + + +TP++P Sbjct: 486 ALVEEAAAAAASMQTQAGRLMQMVSVFRLSEREPLVRREIDVTPSSP 532 >gi|300312448|ref|YP_003776540.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 596 Score = 256 bits (653), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 155/239 (64%), Positives = 188/239 (78%), Gaps = 14/239 (5%) Query: 1 MEELTSTVKHNASNAQNAKEMAATASTVAQEGGEVVAQVVDTMSAINESSRKMADIISVI 60 MEELT TVK NA NA A ++A +AS+ A +GGEVV+QVVDTM AIN+SSRK+ DIISVI Sbjct: 307 MEELTGTVKQNAENALQANQLAHSASSTASKGGEVVSQVVDTMQAINDSSRKIVDIISVI 366 Query: 61 DGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEIKTLIEDSVDKV 120 DGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSAAAAKEIK+LI+DSV+KV Sbjct: 367 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKSLIDDSVEKV 426 Query: 121 TVGARLADQAGTTMSGIVENAGKVTSIIGEISAASTEQTAGIEQINQAIMQMDDVTQQNA 180 G++L +QAG TMS +V + +VT I+GEI+ AS EQ+ GIEQ+N+AI QMD+VTQQNA Sbjct: 427 EAGSQLVEQAGATMSEVVTSVQRVTDIVGEIAEASREQSTGIEQVNRAITQMDEVTQQNA 486 Query: 181 SLVEEAAAASRALQDQADALAQIVSIFNLGQTAIGMDAPRTITPTAPKTIAGAPRSEPK 239 +LVEEAAAA+++LQ QA L VSIF + + AP AG P S+P+ Sbjct: 487 ALVEEAAAAAQSLQAQATNLVGAVSIFKIEAHQV---AP-----------AGKPASKPR 531 >gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 583 Score = 253 bits (647), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 163/280 (58%), Positives = 195/280 (69%), Gaps = 20/280 (7%) Query: 1 MEELTSTVKHNASNAQNAKEMAATASTVAQEGGEVVAQVVDTMSAINESSRKMADIISVI 60 +EELTS+VK NA + + + E+AA AS VA +GG V QVV TM AIN+SS K+ DIISVI Sbjct: 305 LEELTSSVKQNADHTRKSSELAANASQVANQGGLAVKQVVQTMGAINDSSHKIVDIISVI 364 Query: 61 DGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEIKTLIEDSVDKV 120 DGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR LAQRSA AAKEIK LI DSV++V Sbjct: 365 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRGLAQRSATAAKEIKELINDSVNQV 424 Query: 121 TVGARLADQAGTTMSGIVENAGKVTSIIGEISAASTEQTAGIEQINQAIMQMDDVTQQNA 180 T G L QAG+TM +V + +V+ I+GEISAA+ EQ+ GIEQ+NQAIMQMD+ TQQNA Sbjct: 425 TSGTELVAQAGSTMDAVVNSIEQVSHIVGEISAATREQSDGIEQVNQAIMQMDNTTQQNA 484 Query: 181 SLVEEAAAASRALQDQADALAQIVSIFNLGQTAIGMDAPRTITPTAP---KTIAGAPRSE 237 +LVEEAAAA++ALQDQA L +V +F L + AP + P AP K A APR+ Sbjct: 485 ALVEEAAAAAQALQDQAQRLLDLVGVFRLDEVGGSGPAPSAVAPVAPVLRKVSAAAPRA- 543 Query: 238 PKRLGNK----------------AATPSAQAAKEEDWATF 261 K L K A S + K E+W TF Sbjct: 544 TKSLPAKPAAPAVTNAPAAPAAPALPASKREDKSEEWETF 583 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.308 0.120 0.305 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 551,776 Number of extensions: 17411 Number of successful extensions: 282 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 212 Number of HSP's successfully gapped: 71 Length of query: 261 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 178 Effective length of database: 1,226,865 Effective search space: 218381970 Effective search space used: 218381970 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 129 (54.3 bits)