BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0238.p (301 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310624|ref|YP_003774716.1| transcription regulator protein... 607 e-175 gi|300310278|ref|YP_003774370.1| transcription regulator protein... 320 6e-89 gi|300313720|ref|YP_003777812.1| LysR family transcription regul... 285 3e-78 gi|300313017|ref|YP_003777109.1| LysR family transcription regul... 152 4e-38 gi|300309921|ref|YP_003774013.1| LysR family transcription regul... 140 1e-34 >gi|300310624|ref|YP_003774716.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 310 Score = 607 bits (1566), Expect = e-175, Method: Compositional matrix adjust. Identities = 297/299 (99%), Positives = 298/299 (99%) Query: 1 MATFARVVELGAFSRAAKALGLTTSSVSQHVRALELSLQATLLNRSTRKLSLTEAGTLFY 60 MATFARVVELGAFSRAAKALGLTTSSVSQHVRALELSLQATLLNRSTRKLSLTEAGTLFY Sbjct: 12 MATFARVVELGAFSRAAKALGLTTSSVSQHVRALELSLQATLLNRSTRKLSLTEAGTLFY 71 Query: 61 KHCAHIVTAASEAEQSIAVLNNEMVGEVRIAVSSFMSTKYLIPALHDFIRHNPKVRLRLE 120 KHCAHIVTAASEAEQSIAVLNNEMVGEVRIAVSSFMSTKYLIPALHDFIRHNPKVRLRLE Sbjct: 72 KHCAHIVTAASEAEQSIAVLNNEMVGEVRIAVSSFMSTKYLIPALHDFIRHNPKVRLRLE 131 Query: 121 VADNNVDLIEQRIDLALRAGRNRQPGDIFLGRFSDVLCASPSYLAVRPPIHSPVDLLHHD 180 VADNNVDLIEQRIDLALRAGRNRQPGDIFLGRFSDVLCASPSYLAVRPPIHSPVDLLHHD Sbjct: 132 VADNNVDLIEQRIDLALRAGRNRQPGDIFLGRFSDVLCASPSYLAVRPPIHSPVDLLHHD 191 Query: 181 FLLFNPHGEPCFLEFSNAASGTVRVRLQPRISANHARSLRYLALDGHGITRLLECKIEDD 240 FLLFNPHGEPCFLEFSNAASGTVRVRLQPRISANHARSLRYLALDGHGITRLLECKI+DD Sbjct: 192 FLLFNPHGEPCFLEFSNAASGTVRVRLQPRISANHARSLRYLALDGHGITRLLECKIDDD 251 Query: 241 LRTGRLVQVLPDWTLGGFDVYVTVRHRDNMPLKVRQCLEHIQHYFEVVLPLNAVAAAPA 299 LR GRLVQVLPDWTLGGFDVYVTVRHRDNMPLKVRQCLEHIQHYFEVVLPLNAVAAAPA Sbjct: 252 LRAGRLVQVLPDWTLGGFDVYVTVRHRDNMPLKVRQCLEHIQHYFEVVLPLNAVAAAPA 310 >gi|300310278|ref|YP_003774370.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 313 Score = 320 bits (821), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 157/301 (52%), Positives = 210/301 (69%), Gaps = 3/301 (0%) Query: 1 MATFARVVELGAFSRAAKALGLTTSSVSQHVRALELSLQATLLNRSTRKLSLTEAGTLFY 60 M F+RVVELGAFS+AA+ LGLT+SSVSQH+ ALE L TLL+R+TRKLSLTEAG FY Sbjct: 12 MVIFSRVVELGAFSKAARELGLTSSSVSQHISALEAMLGTTLLHRTTRKLSLTEAGHSFY 71 Query: 61 KHCAHIVTAASEAEQSIAVLNNEMVGEVRIAVSSFMSTKYLIPALHDFIRHNPKVRLRLE 120 +C+ IV ASEA Q L+ E++GE+RIA SSFM+++YL+PAL DFIR +PK+R+ ++ Sbjct: 72 ANCSRIVDLASEARQLTESLHKELLGELRIAASSFMASEYLVPALDDFIRAHPKLRINID 131 Query: 121 VADNNVDLIEQRIDLALRAGRNRQPGDIFLGRFSDVLCASPSYLAVRPPIHSPVDLLHHD 180 V D+N+DL+++ +DLALR G+ D++L VLCASP+YL PI P DL HD Sbjct: 132 VNDHNIDLMDKSVDLALRVGKTSSENDVYLASLPAVLCASPAYLRAHAPIRHPEDLPQHD 191 Query: 181 FLLFNPHGEPCFLEFSNAASGTVRVRLQPRISANHARSLRYLALDGHGITRLLECKIEDD 240 FL F PHG + N ++ L PR+SANHARSLR LAL GHG+ RLL CK+++D Sbjct: 192 FLFFTPHGSSVEVSLKNRGGQCAQLHLTPRVSANHARSLRRLALQGHGVARLLACKVQED 251 Query: 241 LRTGRLVQVLPDWTLGGFDVYVTVRHRDNMPLKVRQCLEHIQHYFEVVLPLNAVAAAPAP 300 L GRL VLPDW L + ++T ++R++ P K+ +C+EH++ YF P A+PA Sbjct: 252 LDAGRLEVVLPDWELDVYCAFLTTKYRESPPQKIVKCIEHLEAYFRSRHP---APASPAN 308 Query: 301 A 301 A Sbjct: 309 A 309 >gi|300313720|ref|YP_003777812.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 307 Score = 285 bits (729), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 149/291 (51%), Positives = 204/291 (70%) Query: 1 MATFARVVELGAFSRAAKALGLTTSSVSQHVRALELSLQATLLNRSTRKLSLTEAGTLFY 60 M F+RVVE+G+FS AA ALGL++SSVSQH+ ALE ++ TLL+R+TRKLSLTEAG FY Sbjct: 13 MVIFSRVVEMGSFSGAASALGLSSSSVSQHISALEAAMGMTLLHRTTRKLSLTEAGQTFY 72 Query: 61 KHCAHIVTAASEAEQSIAVLNNEMVGEVRIAVSSFMSTKYLIPALHDFIRHNPKVRLRLE 120 +CA IV A+EA Q+ L+ E+VGE+RIA SSFM+++YL+PAL I+ PK+R+ ++ Sbjct: 73 ANCARIVVLANEARQTAENLHKEVVGELRIATSSFMASEYLVPALEGLIQQYPKLRINID 132 Query: 121 VADNNVDLIEQRIDLALRAGRNRQPGDIFLGRFSDVLCASPSYLAVRPPIHSPVDLLHHD 180 V D+NVDL+E+ +D+ALRAG+ P D+FL VLCA+P+YL PI +P DL+ H+ Sbjct: 133 VNDHNVDLMEKGVDIALRAGKAPGPEDVFLAPLESVLCAAPAYLQRSAPIRTPEDLMGHE 192 Query: 181 FLLFNPHGEPCFLEFSNAASGTVRVRLQPRISANHARSLRYLALDGHGITRLLECKIEDD 240 F+ F P G L + V++RL PRIS NH SL L L GHG+ RLL+ K+++D Sbjct: 193 FMFFTPLGSTMELGLRDRHGQQVQMRLTPRISVNHTHSLHKLTLQGHGVARLLQTKVQED 252 Query: 241 LRTGRLVQVLPDWTLGGFDVYVTVRHRDNMPLKVRQCLEHIQHYFEVVLPL 291 L GRL +VLP+WT G+ +++ +RD +P KV C+EHIQ YF PL Sbjct: 253 LDAGRLQRVLPEWTANGYCAFLSTNYRDQVPQKVLVCVEHIQDYFRRRHPL 303 >gi|300313017|ref|YP_003777109.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 305 Score = 152 bits (383), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 99/286 (34%), Positives = 154/286 (53%), Gaps = 3/286 (1%) Query: 4 FARVVELGAFSRAAKALGLTTSSVSQHVRALELSLQATLLNRSTRKLSLTEAGTLFYKHC 63 F +V ELG+ SRAA+ALGL+ ++ S+ + ALE L A L+ RSTR+L L+ AG FY+HC Sbjct: 10 FVQVAELGSLSRAAEALGLSNAAASRALAALEQRLGARLVERSTRRLGLSRAGEDFYRHC 69 Query: 64 AHIVTAASEAEQSIAVLNNEMVGEVRIAVSSFMSTKYLIPALHDFIRHNPKVRLRLEVAD 123 +T EAEQ + + G +RI S K++ P L F + P+VRL + A+ Sbjct: 70 KAALTQMKEAEQQVNAASAAPSGTLRITSSLSFCMKHISPLLPRFHQRYPEVRLEVIAAN 129 Query: 124 NNVDLIEQRIDLALRAGRNRQPGDIFLGRFSD---VLCASPSYLAVRPPIHSPVDLLHHD 180 +DL++ IDLA+R +I + R + +L A+P YLA R + DL HD Sbjct: 130 RYMDLLDSDIDLAIRTREFEPDANIAVRRLATTRRILAAAPGYLAARGTPRTLDDLAQHD 189 Query: 181 FLLFNPHGEPCFLEFSNAASGTVRVRLQPRISANHARSLRYLALDGHGITRLLECKIEDD 240 L+++ EP L S + ++ + +N + +R AL+G GI I DD Sbjct: 190 LLVYSHAKEPNRLHLSGRDGSQRTLEIKSLMQSNDGQIIRAAALEGLGILIQPNYIIYDD 249 Query: 241 LRTGRLVQVLPDWTLGGFDVYVTVRHRDNMPLKVRQCLEHIQHYFE 286 + GRLV VL +W L + + + R ++P +VR ++ + +FE Sbjct: 250 IVAGRLVPVLDEWDLPRLSINIAYQGRKHLPARVRVFIDFLVQHFE 295 >gi|300309921|ref|YP_003774013.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 299 Score = 140 bits (353), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 93/287 (32%), Positives = 149/287 (51%), Gaps = 3/287 (1%) Query: 4 FARVVELGAFSRAAKALGLTTSSVSQHVRALELSLQATLLNRSTRKLSLTEAGTLFYKHC 63 F V +LG+F +AA+ALG++ ++VS+ V LE L + L+ R+TR+LSLTEAG L+ + C Sbjct: 10 FIAVADLGSFVKAAEALGISKAAVSRTVLELEARLGSRLMQRTTRRLSLTEAGALYLERC 69 Query: 64 AHIVTAASEAEQSIAVLNNEMVGEVRIAVSSFMSTKYLIPALHDFIRHNPKVRLRLEVAD 123 IV A EA+ ++ + + G +RI +L P F+ +P++ L + ++D Sbjct: 70 KQIVAALEEADDLLSSGSAKPTGLLRINAPLTFGVLHLAPLWPMFLERHPEISLDITLSD 129 Query: 124 NNVDLIEQRIDLALRAGRNRQPGDIFLGRFSDVL--CASPSYLAVRPPIHSPVDLLHHDF 181 VD+I++ D+A+R R + S L CASP+YL P +L H Sbjct: 130 RIVDIIDEGYDMAIRIARLSDSTLVHRKLTSTSLHVCASPAYLDAHGTPAHPHELAQHQT 189 Query: 182 LLFNPHGEPCFLEFSNAASGTVRVRLQPRISANHARSLRYLALDGHGITRLLECKIEDDL 241 + ++ + +F N G V VR+ R+ N+ S AL G GITR I+ L Sbjct: 190 ISYSYNQSKDEWQF-NGPEGPVSVRVSSRLHVNNGDSCVQAALGGIGITRQPTFMIDQYL 248 Query: 242 RTGRLVQVLPDWTLGGFDVYVTVRHRDNMPLKVRQCLEHIQHYFEVV 288 R+G+LV +L D+ +Y R ++P K+R L+ + F V Sbjct: 249 RSGQLVSILGDYGAPELGIYAVYPSRAHLPAKMRAMLDFLTEAFAQV 295 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.137 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 819,631 Number of extensions: 32231 Number of successful extensions: 254 Number of sequences better than 1.0e-08: 51 Number of HSP's gapped: 211 Number of HSP's successfully gapped: 51 Length of query: 301 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 216 Effective length of database: 1,217,395 Effective search space: 262957320 Effective search space used: 262957320 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 130 (54.7 bits)