BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0234.p
         (554 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310628|ref|YP_003774720.1| hypothetical protein Hsero_1296...  1083   0.0  

>gi|300310628|ref|YP_003774720.1| hypothetical protein Hsero_1296
           [Herbaspirillum seropedicae SmR1]
          Length = 551

 Score = 1083 bits (2802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 541/554 (97%), Positives = 543/554 (98%), Gaps = 3/554 (0%)

Query: 1   VPSARPFYYLDNFQQVLDWLAQRCADLLDLRERQFIAAFPGLPLPSRALLVRMMMRKGEL 60
           +PSARPFYYLDNFQQVLDWLAQRCADLLDLRERQFI AFPGLPLPSRAL VRMMMRKGEL
Sbjct: 1   MPSARPFYYLDNFQQVLDWLAQRCADLLDLRERQFIVAFPGLPLPSRALFVRMMMRKGEL 60

Query: 61  FRTGRLDYPEIGCPLEAAKGLPEDWVERDAALTLEQFFSLSTKPELVRAFALTGAQRAAR 120
           FR+GRLDYPEIGCPLEAAKGLPEDWVERDAALTLEQFFSLSTKPELVRAFALTGAQRAAR
Sbjct: 61  FRSGRLDYPEIGCPLEAAKGLPEDWVERDAALTLEQFFSLSTKPELVRAFALTGAQRAAR 120

Query: 121 KADLLAQLAADPAWDQARVLRQWCRQGDELALRLRVQDLCDRLRLMFFGNLRQDWSEFVL 180
           K DLLAQLAADPAWDQARVLRQWCRQGDELALRLRVQDLCDRLRLMFFGNLRQDWSEFVL
Sbjct: 121 KTDLLAQLAADPAWDQARVLRQWCRQGDELALRLRVQDLCDRLRLMFFGNLRQDWSEFVL 180

Query: 181 ADLGLFRYERVALSPEARGFRQRSDVDHYLRLHACSEALEAGEDAADVMAALTVAAPAGG 240
           ADLG FRYERVALSPEARGFRQRSDVDHYLRLHACSEALEAGEDAADVMAALTVAAPA G
Sbjct: 181 ADLGRFRYERVALSPEARGFRQRSDVDHYLRLHACSEALEAGEDAADVMAALTVAAPAEG 240

Query: 241 HDNPWLQSRYERLLFKLGQHLEKQGHWPQAHAVYARCPYPGARGRAMRVLEKQGRYAQAY 300
           HDNPWLQSRYERLLFKLGQHLEKQGHWPQAHAVYARCPYPGARGRAMRVLEKQGRYAQAY
Sbjct: 241 HDNPWLQSRYERLLFKLGQHLEKQGHWPQAHAVYARCPYPGARGRAMRVLEKQGRYAQAY 300

Query: 301 ALFQAAQAAPESEAERQHLQRIGPRLTRQLGYPPMVRVRTLPPQRLDLVLAMQAGQGGQG 360
           ALFQAAQAAPESEAERQHLQRIGPRLTRQLGYPPMVRVRTLPPQRLDLVLAMQA   GQG
Sbjct: 301 ALFQAAQAAPESEAERQHLQRIGPRLTRQLGYPPMVRVRTLPPQRLDLVLAMQA---GQG 357

Query: 361 VEAAVRAHLQAPDAPVFYVENTLATALFGLLCWDAIFAAIPGAFFHPFQREPADLHSADF 420
           VEAAVRAHLQAPDAPVFYVENTLATALFGLLCWDAIFAAIPGAFFHPFQREPADLHSADF
Sbjct: 358 VEAAVRAHLQAPDAPVFYVENTLATALFGLLCWDAIFAAIPGAFFHPFQREPADLHSADF 417

Query: 421 HARRREAFAHCLARLDQERHREAILATYEDKQGVLSPFVSWGAISRELLVLALDCIPAWH 480
           HARRREAFAHCLARLDQERHREAILA YEDKQGVLSPFVSWGAISR LLVLALDCIPAWH
Sbjct: 418 HARRREAFAHCLARLDQERHREAILAAYEDKQGVLSPFVSWGAISRGLLVLALDCIPAWH 477

Query: 481 LKHWCLRILEDVRENRSGFPDLIQFWPQQRRYRMIEVKGPGDRLQDNQQRWLAFCAQHQM 540
           LKHWCLRILEDVRENRSGFPDLIQFWPQQRRYRMIEVKGPGDRLQDNQQRWLAFCAQHQM
Sbjct: 478 LKHWCLRILEDVRENRSGFPDLIQFWPQQRRYRMIEVKGPGDRLQDNQQRWLAFCAQHQM 537

Query: 541 PVAVCYLQWQQQAA 554
           PVAVCYLQWQQQ A
Sbjct: 538 PVAVCYLQWQQQVA 551


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.138    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,640,348
Number of extensions: 64735
Number of successful extensions: 239
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 236
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 464
Effective length of database: 1,193,720
Effective search space: 553886080
Effective search space used: 553886080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 133 (55.8 bits)