BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0233.p
         (748 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310629|ref|YP_003774721.1| ATP-dependent Rad3-related DNA ...  1496   0.0  

>gi|300310629|ref|YP_003774721.1| ATP-dependent Rad3-related DNA
           helicase c2 [Herbaspirillum seropedicae SmR1]
          Length = 763

 Score = 1496 bits (3874), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 737/748 (98%), Positives = 744/748 (99%)

Query: 1   VRALCEFTAKAGDLDLRFTPTPTARQGMEGHAIVASRRGEHYQSELALAIDHGALHVRGR 60
           VRALCEFTAKAGDLDLRFTPTPTARQGMEGHAIVASRRGEHYQSELALAIDHGALHVRGR
Sbjct: 16  VRALCEFTAKAGDLDLRFTPTPTARQGMEGHAIVASRRGEHYQSELALAIDHGALHVRGR 75

Query: 61  ADGYDADRQLLEEVKTYRGQLASIPDNHRHLHWAQLRVYGHLLCQAQGLERVNLALVYFE 120
           ADGYDADRQLLEEVKTYRGQLASIPDNHRHLHWAQLRVYGHLLCQAQGLERVNLALVYFE
Sbjct: 76  ADGYDADRQLLEEVKTYRGQLASIPDNHRHLHWAQLRVYGHLLCQAQGLERVNLALVYFE 135

Query: 121 IGSQQETRLEESRSREELAELFGALCERFIDWAAQELAHRQARDAALEQLRFPHGDFRPG 180
           IGSQQETRLEESRSREELAELFGALCERFI WAAQELAHRQARDAALEQLRFPHGDFRPG
Sbjct: 136 IGSQQETRLEESRSREELAELFGALCERFIGWAAQELAHRQARDAALEQLRFPHGDFRPG 195

Query: 181 QRQLAEAVFRAHAGRRSLLAQAPTGIGKTLGTLFPALKAAPRQQLDKILFLAAKTPARQL 240
           QRQLAEAVFRAHAGRRSLLAQAPTGIGKTLGTLFPALKAAPRQQLDK+LFLAAKTP RQL
Sbjct: 196 QRQLAEAVFRAHAGRRSLLAQAPTGIGKTLGTLFPALKAAPRQQLDKVLFLAAKTPGRQL 255

Query: 241 ALDAAATLKGQGVLSLRVLELSAREKACEHPERLCRGDSCPLAQGFYDRLAQARAACLDA 300
           ALDAAATLKGQGVL LRVLELSAREKACEHPERLCRGDSCPLAQGFYDRLAQARAACLDA
Sbjct: 256 ALDAAATLKGQGVLPLRVLELSAREKACEHPERLCRGDSCPLAQGFYDRLAQARAACLDA 315

Query: 301 PLLDRASLRQIALAHQVCPYYLGSEMTRWSDVIVGDYNYWFDGGAMLYAMAQAHDWRVSV 360
           PLLDRASLRQIALAHQVCPYYLGSEMTRWSDVIVGDYNYWFDGGAMLYAMAQAHDWRVSV
Sbjct: 316 PLLDRASLRQIALAHQVCPYYLGSEMTRWSDVIVGDYNYWFDGGAMLYAMAQAHDWRVSV 375

Query: 361 LADEAHNLVARARGMYSAQLSRASLQAAHAVAPAAVAKLLEKIGRAWSAIGKQALLPYQV 420
           LADEAHNLVARARGMYSAQLSRASL+AA AVAPAAVAKLLEKIGRAWSAIGKQALLPYQV
Sbjct: 376 LADEAHNLVARARGMYSAQLSRASLRAARAVAPAAVAKLLEKIGRAWSAIGKQALLPYQV 435

Query: 421 LEAMPPRFIDTLSAANNAISDHLAQVAVPLEPPLRDFHLEAMAFVRLAESFGPHSLLDLT 480
           LEAMPPRFI+TLSAANNAISDHLAQVAVPLEPPLRDFHLEAMAFVRLAESFGPHSLLDLT
Sbjct: 436 LEAMPPRFIETLSAANNAISDHLAQVAVPLEPPLRDFHLEAMAFVRLAESFGPHSLLDLT 495

Query: 481 RQDERNTVLAIRNVVPAPFLGPRFAQAHATTLFSATLGPWHYFADLLGMPKDTAWIDVES 540
           RQDERNTVLA+RNVVPAPFLGPRFAQAHATTLFSATLGPWHYFADLLGMPKDTAWIDVES
Sbjct: 496 RQDERNTVLAVRNVVPAPFLGPRFAQAHATTLFSATLGPWHYFADLLGMPKDTAWIDVES 555

Query: 541 PFHASQLEVRVARDISTRWQRRSASIAPITALMARQFHQRPGNYLAFFSSFDYLQQALAA 600
           PFHASQLEVRVA+DISTRWQRRSASIAPITALMARQFHQRPGNYLAFFSSFDYLQQALAA
Sbjct: 556 PFHASQLEVRVAQDISTRWQRRSASIAPITALMARQFHQRPGNYLAFFSSFDYLQQALAA 615

Query: 601 FTRAHPDIPTWQQSRGMSEAEREAFLARFVVGGRGIGFAVLGGSFGEGVDLPGERLIGAF 660
           FTRAHPDIPTWQQSRGMSEAEREAFLARFVVGGRGIGFAVLGGSFGEGVDLPGERLIGAF
Sbjct: 616 FTRAHPDIPTWQQSRGMSEAEREAFLARFVVGGRGIGFAVLGGSFGEGVDLPGERLIGAF 675

Query: 661 VATLGLPQVNEVNEQLRLRMQALFGAGYDYTYLYPGLQKVVQAAGRVIRTESDQGVVWLI 720
           VATLGLPQVNEVNEQLRLRMQALFGAGYDYTYLYPGLQKVVQAAGRVIRTESDQGVVWLI
Sbjct: 676 VATLGLPQVNEVNEQLRLRMQALFGAGYDYTYLYPGLQKVVQAAGRVIRTESDQGVVWLI 735

Query: 721 DERFAQPEVQALLPAWWKRDDVLRATGH 748
           DERFAQPEVQALLP+WWKRDDVL+ATGH
Sbjct: 736 DERFAQPEVQALLPSWWKRDDVLQATGH 763


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,352,945
Number of extensions: 99907
Number of successful extensions: 355
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 355
Number of HSP's successfully gapped: 1
Length of query: 748
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 656
Effective length of database: 1,184,250
Effective search space: 776868000
Effective search space used: 776868000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 134 (56.2 bits)