BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0230.p
         (937 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310633|ref|YP_003774725.1| SMC domain-containing protein [...  1890   0.0  

>gi|300310633|ref|YP_003774725.1| SMC domain-containing protein
           [Herbaspirillum seropedicae SmR1]
          Length = 937

 Score = 1890 bits (4895), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 936/937 (99%), Positives = 937/937 (100%)

Query: 1   MFHLQSLELLQWDYCQRLTLPLDGSIITIAGPNGSGKTTLLDAMRTLLGLECSGGRSYKT 60
           MFHLQSLELLQWDYCQRLTLPLDGSIITIAGPNGSGKTTLLDAMRTLLGLECSGGRSYKT
Sbjct: 1   MFHLQSLELLQWDYCQRLTLPLDGSIITIAGPNGSGKTTLLDAMRTLLGLECSGGRSYKT 60

Query: 61  YARHANADTTWLRATVDNRPHGRQTSTRPFARNLLYADQVTLACRIERNGGDWQRRYCMS 120
           YARHANADTTWLRATVDNRPHGRQTSTRPFARNLLYADQVTLACRIERNGGDWQRRYCMS
Sbjct: 61  YARHANADTTWLRATVDNRPHGRQTSTRPFARNLLYADQVTLACRIERNGGDWQRRYCMS 120

Query: 121 DGDVAIETLAQLPEKDWLGLDHWRKRLEGAGLSRAIARVLALEQGQTDRLCEFSPKELLR 180
           DGDVAIETLAQLPEKDWLGLDHWRKRLEGAGLSRAIARVLALEQGQTDRLCEFSPKELLR
Sbjct: 121 DGDVAIETLAQLPEKDWLGLDHWRKRLEGAGLSRAIARVLALEQGQTDRLCEFSPKELLR 180

Query: 181 LVFEVFGDQEVLDRYEEARRHQRDLAAEVTLAEQELAYSEAQLAQLDSRVTLYRQYQGKL 240
           LVFEVFGDQEVLDRYEEARRHQRDLAAEVTLAEQELAYSEAQLAQLDSRVTLYRQYQGKL
Sbjct: 181 LVFEVFGDQEVLDRYEEARRHQRDLAAEVTLAEQELAYSEAQLAQLDSRVTLYRQYQGKL 240

Query: 241 RERETLATEVIPVLRWHEERQGTAHRLRELHRQRLHHNSQRRQRSSDTLQLSALLTQQQA 300
           RERETLATEVIPVLRWHEERQGTAHRLRELHRQRLHHNSQRRQRSSDTLQLSALLTQQQA
Sbjct: 241 RERETLATEVIPVLRWHEERQGTAHRLRELHRQRLHHNSQRRQRSSDTLQLSALLTQQQA 300

Query: 301 AREKVATLERDKAEAQQAQQKARDAEKPVEELVKQADELLALSAVEGDAAQLLARVEELE 360
           AREKVATLERDKAEAQQAQQKARDAEKPVEELVKQADELLALSAVEGDAAQLLARVEELE
Sbjct: 301 AREKVATLERDKAEAQQAQQKARDAEKPVEELVKQADELLALSAVEGDAAQLLARVEELE 360

Query: 361 QNKSDLHDRWRALEQQRKDAQEALERVSGQRQAPKPGDVQQFTRSLRQAGIAHHILADVI 420
           QNKSDLHDRWRALEQQRKDAQEALERVSGQRQAPKPGDVQQFTRSLRQAGIAHHILADVI
Sbjct: 361 QNKSDLHDRWRALEQQRKDAQEALERVSGQRQAPKPGDVQQFTRSLRQAGIAHHILADVI 420

Query: 421 EISDDHWRAAAEGVLRASCWVVVLEDPKDEAAAMALAERERYRHYVVADAASAPDKPNAD 480
           EISDDHWRAAAEGVLRASCWVVVLEDPKDEAAAMALAERERYRHYVVADAASAPDKPNAD
Sbjct: 421 EISDDHWRAAAEGVLRASCWVVVLEDPKDEAAAMALAERERYRHYVVADAASAPDKPNAD 480

Query: 481 SLLAVLRFSAKAPSWLLRQLAQIRRVDDTVEGASVGGEWITPQAYWRDGRGGRSVWRDPG 540
           SLLAVLRFSAKAPSWLLRQLAQIRRVDDTVEGASVGGEWITPQAYWRDGRGGRSVWRDPG
Sbjct: 481 SLLAVLRFSAKAPSWLLRQLAQIRRVDDTVEGASVGGEWITPQAYWRDGRGGRSVWRDPG 540

Query: 541 DYQFGAAAMASRQASIQKRLASLDEQLTDIVLKQSEVKRQLDAAKKATQGHLAAEALARR 600
           DYQFGAAAMASRQASIQKRLASLDEQLTDIVLKQSEVKRQLDAAKKATQGHLAAEALARR
Sbjct: 541 DYQFGAAAMASRQASIQKRLASLDEQLTDIVLKQSEVKRQLDAAKKATQGHLAAEALARR 600

Query: 601 SEEFEEARRQLPSLRQARMAASERWSQLDLHHAAAIEQRTIIDGKHAALERRLRESEGDL 660
           SEEFEEARRQLPSLRQARMAASERWSQLDLHHAAAIEQRTIIDGKHAALERRLRESEGDL
Sbjct: 601 SEEFEEARRQLPSLRQARMAASERWSQLDLHHAAAIEQRTIIDGKHAALERRLRESEGDL 660

Query: 661 AGQEREWRVRHDEQRARALASRAQKAGFPQRWIAGASLQLLYEKYTNAKQAELRMTSVEN 720
           AGQEREWRVRHDEQRARALASRAQKAGFPQRWI+GASLQLLYEKYTNAKQAELRMTSVEN
Sbjct: 661 AGQEREWRVRHDEQRARALASRAQKAGFPQRWISGASLQLLYEKYTNAKQAELRMTSVEN 720

Query: 721 ELESGQWEKDGTVEDKHLIMQGTVGNQRNELDARKISNAQAEEAVGNARERYIDVLRATV 780
           ELESGQWEKDGTVEDKHLIMQGTVGNQRNELDARKISNAQAEEAVGNARERYIDVLRATV
Sbjct: 721 ELESGQWEKDGTVEDKHLIMQGTVGNQRNELDARKISNAQAEEAVGNARERYIDVLRATV 780

Query: 781 RRYRKNIIDLGALAGVIVSAELPHLDNDDAVLRQAELKVSFNFDGKGEIGLNDGEASGGQ 840
           RRYRKNIIDLGALAGVIVSAELPHLDNDDAVLRQAELKVSFNFDGKGEIGLNDGEASGGQ
Sbjct: 781 RRYRKNIIDLGALAGVIVSAELPHLDNDDAVLRQAELKVSFNFDGKGEIGLNDGEASGGQ 840

Query: 841 QVIKSLILLVGLLKDDDMPGGFVFIDEPFAHLDVRNIQLVGNFLKSTRAQYVLTTPITHN 900
           QVIKSLILLVGLLKDDDMPGGFVFIDEPFAHLDVRNIQLVGNFLKSTRAQYVLTTPITHN
Sbjct: 841 QVIKSLILLVGLLKDDDMPGGFVFIDEPFAHLDVRNIQLVGNFLKSTRAQYVLTTPITHN 900

Query: 901 VEVFEPADITLVTSKKPREARWAPPIGVLQRRLRLDA 937
           VEVFEPADITLVTSKKPREARWAPPIGVLQRRLRLDA
Sbjct: 901 VEVFEPADITLVTSKKPREARWAPPIGVLQRRLRLDA 937


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.131    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,754,086
Number of extensions: 115785
Number of successful extensions: 660
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 660
Number of HSP's successfully gapped: 1
Length of query: 937
Length of database: 1,619,870
Length adjustment: 94
Effective length of query: 843
Effective length of database: 1,174,780
Effective search space: 990339540
Effective search space used: 990339540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 135 (56.6 bits)