BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0217.p
         (389 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310646|ref|YP_003774738.1| benzoate membrane transport pro...   741   0.0  

>gi|300310646|ref|YP_003774738.1| benzoate membrane transport
           protein [Herbaspirillum seropedicae SmR1]
          Length = 396

 Score =  741 bits (1912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/389 (99%), Positives = 386/389 (99%)

Query: 1   MVQRQGSLTAWVAGFLAVLISYAGPLVIFVQAAHAGQVPQAQLVSWVWGISMGAGVSGLL 60
           MVQRQGSLTAWVAGFLAVLISYAGPLVIFVQAAHAGQVPQAQLVSWVWGISMGAGVSGLL
Sbjct: 8   MVQRQGSLTAWVAGFLAVLISYAGPLVIFVQAAHAGQVPQAQLVSWVWGISMGAGVSGLL 67

Query: 61  LSSWFRLPIITAWSAPGTALLLSLFPGISMPEVVGAYLMAAVLLILIGVTGYFEKILAFI 120
           LS WFRLPIITAWSAPGTALLLSLFPGISMPEVVGAYLMAAVLLILIGVTGYFEKILAFI
Sbjct: 68  LSGWFRLPIITAWSAPGTALLLSLFPGISMPEVVGAYLMAAVLLILIGVTGYFEKILAFI 127

Query: 121 PKGIAAGMMAGILLQFGLQAFRSSVAAPLMVAAMLAAYLAGRRWWPRYCIVVVALTGFAV 180
           PKGIAAGMMAGILLQFGLQAFRSSVAAPLMVAAMLAAYLAGRRWWPRY IVVVALTGFAV
Sbjct: 128 PKGIAAGMMAGILLQFGLQAFRSSVAAPLMVAAMLAAYLAGRRWWPRYGIVVVALTGFAV 187

Query: 181 AFASGQTALGALQLQLAEPVFIAPHFSVGVFFSLTVPLVLVSLTGQFLPGMAVLQLAGYH 240
           AFASGQTALGALQLQLAEPVFIAPHFSVGVFFSLTVPLVLVSLTGQFLPGMAVLQLAGYH
Sbjct: 188 AFASGQTALGALQLQLAEPVFIAPHFSVGVFFSLTVPLVLVSLTGQFLPGMAVLQLAGYH 247

Query: 241 PSTRAVVTGTGLASLATACFGGITIVLAAITASLCTGKDAHPDPGKRYIAGIANGVFYLI 300
           PSTRAVVTGTGLASLATACFGGITIVLAAITASLCTGKDAHPDPGKRYIAGIANGVFYLI
Sbjct: 248 PSTRAVVTGTGLASLATACFGGITIVLAAITASLCTGKDAHPDPGKRYIAGIANGVFYLI 307

Query: 301 GGTFAASIVTLFTAFPKELIAALAGLALIGAIVSNIRLMSEEGAYVEPSVITFLATASGM 360
           GGTFAASIVTLFTAFPKELIAALAGLALIGAIVSNIRLMSEEG YVEPSVITFLATASGM
Sbjct: 308 GGTFAASIVTLFTAFPKELIAALAGLALIGAIVSNIRLMSEEGDYVEPSVITFLATASGM 367

Query: 361 TLFGLGAAFWGVMVGMAAYWLIGRPVQKK 389
           TLFGLGAAFWGVMVGMAAYWLIGRPVQKK
Sbjct: 368 TLFGLGAAFWGVMVGMAAYWLIGRPVQKK 396


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.139    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,127,343
Number of extensions: 44633
Number of successful extensions: 308
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 307
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 302
Effective length of database: 1,207,925
Effective search space: 364793350
Effective search space used: 364793350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)