BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0216.p
         (426 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310647|ref|YP_003774739.1| hypothetical protein Hsero_1315...   830   0.0  

>gi|300310647|ref|YP_003774739.1| hypothetical protein Hsero_1315
           [Herbaspirillum seropedicae SmR1]
          Length = 422

 Score =  830 bits (2144), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/422 (99%), Positives = 420/422 (99%)

Query: 5   MNPQDFFDPLASEVLAVAPTRAHDLAPLRVLAQRHAAPTVTVVGKYNHGKSRLLNELVGR 64
           MNPQDFFDPLASEVLAVAPTRAHDLA LRVLAQRHAAPTVTVVGKYNHGKSRLLNELVGR
Sbjct: 1   MNPQDFFDPLASEVLAVAPTRAHDLARLRVLAQRHAAPTVTVVGKYNHGKSRLLNELVGR 60

Query: 65  DVFAVADRRETVTLSEHHHAELRWLDAPGLDADVAEQDDGHAQQAIWLHADIRLFVHAAK 124
           DVFAVADRR+TVTLSEHHHAELRWLDAPGLDADVAEQDDGHAQQAIWLHADIRLFVHAAK
Sbjct: 61  DVFAVADRRQTVTLSEHHHAELRWLDAPGLDADVAEQDDGHAQQAIWLHADIRLFVHAAK 120

Query: 125 EGELDAAERTLLQTLREDQLRTRRQTLFVLTQVDQMSDEEQLAKVSAAIQAQAHGLALHP 184
           EGELDAAER LLQTLREDQLRTRRQTLFVLTQVDQMSDEEQLAKVSAAI+AQAHGLALHP
Sbjct: 121 EGELDAAERKLLQTLREDQLRTRRQTLFVLTQVDQMSDEEQLAKVSAAIEAQAHGLALHP 180

Query: 185 VSATRHRNGVEGGKQLLLNKSGIPALQALLREVVQQVPAARQHEQAVLFADIGEQLQQQQ 244
           VSATRHRNGVEGGKQLLLNKSGIPALQALLREVVQQVPAARQHEQAVLFADIGEQLQQQQ
Sbjct: 181 VSATRHRNGVEGGKQLLLNKSGIPALQALLREVVQQVPAARQHEQAVLFADIGEQLQQQQ 240

Query: 245 AAAQAQWQALQQRQQQQRQQFEQGLQSVLESIHQDLLPIVELQGEDPALTPDTAADEFRL 304
           AAAQAQWQALQQRQQQQRQQFEQGLQSVLESIHQDLLPIVELQGEDPALTPDTAADEFRL
Sbjct: 241 AAAQAQWQALQQRQQQQRQQFEQGLQSVLESIHQDLLPIVELQGEDPALTPDTAADEFRL 300

Query: 305 TAGKRERARIHVAYSRACIAIRAHLIQHGVEGLPADQRTSVASLDTVMVAVMGISVKYRA 364
           TAGKRERARIHVAYSRACIAIRAHLIQHGVEGLPADQRTSVASLDTVMVAVMGISVKYRA
Sbjct: 301 TAGKRERARIHVAYSRACIAIRAHLIQHGVEGLPADQRTSVASLDTVMVAVMGISVKYRA 360

Query: 365 DLRRRFCEPAGQAQLMQSFLHYYELSEDQQALQQALAQAQSEQQANTRALEALQRLRQGA 424
           DLRRRFCEPAGQAQLMQSFLHYYELSEDQQALQQALAQAQSEQQANTRALEALQRLRQGA
Sbjct: 361 DLRRRFCEPAGQAQLMQSFLHYYELSEDQQALQQALAQAQSEQQANTRALEALQRLRQGA 420

Query: 425 SA 426
           SA
Sbjct: 421 SA 422


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.129    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,164,767
Number of extensions: 45195
Number of successful extensions: 230
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 338
Effective length of database: 1,203,190
Effective search space: 406678220
Effective search space used: 406678220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)